run-tests.yml

name: Full Tests
on:
  pull_request:
  workflow_dispatch:
  workflow_call:

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  assess-file-changes:
    uses: ./.github/workflows/assess-file-changes.yml

  detect-changelog-updates:
    needs: assess-file-changes
    if: ${{ needs.assess-file-changes.outputs.SOURCE_CHANGED == 'true' }}
    name: Auto-detecting CHANGELOG.md updates
    runs-on: ubuntu-latest
    steps:
      - if:  ${{ needs.assess-file-changes.outputs.CHANGELOG_UPDATED == 'true' }}
        run: echo "CHANGELOG.md has been updated."
      - if:  ${{ needs.assess-file-changes.outputs.CHANGELOG_UPDATED == 'false' }}
        run: |
          echo "CHANGELOG.md has not been updated."
          0

  run:
    name: Full tests on ${{ matrix.os }} with Python ${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
        os: [ubuntu-latest, windows-latest, macos-latest, macos-13] # macos-13 is the latest version of macOS with Intel chip
    steps:
      - uses: actions/checkout@v4
      - run: git fetch --prune --unshallow --tags
      - name: Setup Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Global Setup
        run: |
          pip install -U pip
          pip install pytest-xdist
          git config --global user.email "CI@example.com"
          git config --global user.name "CI Almighty"
          pip install wheel==0.41.2  # needed for scanimage

      - name: Install roiextractors with minimal requirements
        run: pip install .[test]

      - name: Run minimal tests
        run: pytest tests/test_internals -n auto --dist loadscope

      - name: Test full installation (-e needed for codecov report)
        run: pip install -e .[full]

      - name: Get ophys_testing_data current head hash
        id: ophys
        run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"
      - name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}
        uses: actions/cache@v2
        id: cache-ophys-datasets
        with:
          path: ./ophys_testing_data
          key: ophys-datasets-042023-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}

      - name: Run full pytest with coverage
        run: pytest -n auto --dist loadscope --cov=./ --cov-report xml:./codecov.xml
      - if: ${{ matrix.python-version == '3.9' && matrix.os == 'ubuntu-latest'}}
        name: Upload full coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: ./codecov.xml
          flags: unittests
          name: codecov-umbrella
          yml: ./codecov.yml