From 20accef71079125a28ba0e1c2951613feee9baae Mon Sep 17 00:00:00 2001 From: Ivan Blagoev Topolsky Date: Wed, 28 Jun 2023 17:07:44 +0200 Subject: [PATCH] Bugfix/Optimise: move indexing out of align group - otherwise all samples' alignement go in a single group (because they share same index) --- workflow/rules/align.smk | 6 ------ 1 file changed, 6 deletions(-) diff --git a/workflow/rules/align.smk b/workflow/rules/align.smk index c60330f7..cba31b89 100644 --- a/workflow/rules/align.smk +++ b/workflow/rules/align.smk @@ -466,8 +466,6 @@ rule ref_bwa_index: config.ref_bwa_index["conda"] benchmark: "{file}_bwa_index.benchmark" - group: - "align" resources: disk_mb=1250, mem_mb=config.ref_bwa_index["mem"], @@ -542,8 +540,6 @@ elif config.general["aligner"] == "bowtie": config.ref_bowtie_index["conda"] benchmark: "references/ref_bowtie_index.benchmark" - group: - "align" resources: disk_mb=1250, mem_mb=config.ref_bowtie_index["mem"], @@ -647,8 +643,6 @@ elif config.general["aligner"] == "minimap": config.ref_minimap_index["conda"] benchmark: "references/ref_minimap_index.benchmark" - group: - "align" resources: disk_mb=1250, mem_mb=config.ref_minimap_index["mem"],