From fec04f5b17eeb22d1a67c068ff727f5d4cd85c63 Mon Sep 17 00:00:00 2001
From: LaraFuhrmann <55209716+LaraFuhrmann@users.noreply.github.com>
Date: Tue, 12 Sep 2023 16:23:23 +0200
Subject: [PATCH] update config_indels

---
 .../resources/local_haplotype_setup/config_indels/config.yaml | 4 ++--
 .../resources/local_haplotype_setup/config_indels/params.csv  | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/config.yaml b/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/config.yaml
index 0ffae93a..a1eb2feb 100644
--- a/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/config.yaml
+++ b/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/config.yaml
@@ -1,6 +1,6 @@
 method_list: [
-              viloca_alpha_0.000001,
-              viloca_uniform,
+              viloca_alpha_0.000001_extended_window_mode,
+              viloca_uniform_extended_window_mode,
               ]
 replicate_count: 5
 haplotype_generation: mutation_rate
diff --git a/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/params.csv b/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/params.csv
index 84f0d650..0a59e5f8 100644
--- a/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/params.csv
+++ b/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/config_indels/params.csv
@@ -1,3 +1,3 @@
 seq_tech,seq_mode,seq_mode_param,read_length,genome_size,coverage,haplos
 # Population 11
-illumina,amplicon,400:100,249,9719,1000,0.1@0.05@0.05@0.6:0.2:0.1:0.05:0.025:0.025
+illumina,amplicon,400:100,249,9719,5000,0.1@0.05@0.05@0.6:0.2:0.1:0.05:0.025:0.025