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Enrico Cocchi edited this page Dec 7, 2022 · 12 revisions

Welcome to the plotVCF wiki!

This wiki is intended to give you a more detailed explanation of plotVCF usage options and capacities than what is provided in the main GitHub page.

This wiki is divided accordingly to software main sections:

  1. Installation and Requirements
  • 1.1. Install plotVCF
  • 1.2. R packages dependencies
  • 1.3. VCF input file
  • 1.4. RAM capacity
  • 1.5. FASTA files
  1. How to run plotVCF in your R session
  2. Main plotVCF functions:
  • 3.1. Manhattan-style plots generation
  • 3.2. Chromosome summary plots generation
  • 3.3. Gene summary plots generation
  1. Save generated plots
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