notebooks/tutorials/10_SeismicModule/seismic_sandbox.ipynb

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    "#Only use if sandbox is not installed\n",
    "import os,sys\n",
    "sys.path.append('../../../')\n",
    "#import warnings\n",
    "#warnings.filterwarnings(\"ignore\")"
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   "source": [
    "## Initialize Sensor and Projector"
   ]
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    "#save the paths to the calibration files \n",
    "from sandbox import _calibration_dir\n",
    "_calibprojector = _calibration_dir + \"my_projector_calibration.json\"\n",
    "_calibsensor = _calibration_dir + \"my_sensor_calibration.json\""
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      "/home/danielsk78/GitProjects/open_AR_Sandbox/sandbox/sensor/kinectV1.py:7: UserWarning: Freenect module not found, KinectV1 will not work\n",
      "  warn('Freenect module not found, KinectV1 will not work')\n"
     ]
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       "\n",
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       "  events.on('clear_output.CodeCell', handle_clear_output);\n",
       "  events.on('delete.Cell', handle_clear_output);\n",
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       "  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
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       "      register_renderer(events, OutputArea);\n",
       "    }\n",
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       "  }\n",
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     },
     "metadata": {},
     "output_type": "display_data"
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    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(root) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n",
       "    root._bokeh_onload_callbacks = [];\n",
       "    root._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    root._bokeh_timeout = Date.now() + 5000;\n",
       "    root._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  function run_callbacks() {\n",
       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) {\n",
       "        if (callback != null)\n",
       "          callback();\n",
       "      });\n",
       "    } finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.debug(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(css_urls, js_urls, callback) {\n",
       "    if (css_urls == null) css_urls = [];\n",
       "    if (js_urls == null) js_urls = [];\n",
       "\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
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       "      run_callbacks();\n",
       "      return null;\n",
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       "    root._bokeh_is_loading = css_urls.length + js_urls.length;\n",
       "\n",
       "    function on_load() {\n",
       "      root._bokeh_is_loading--;\n",
       "      if (root._bokeh_is_loading === 0) {\n",
       "        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
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       "\n",
       "    function on_error() {\n",
       "      console.error(\"failed to load \" + url);\n",
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       "\n",
       "    for (var i = 0; i < css_urls.length; i++) {\n",
       "      var url = css_urls[i];\n",
       "      const element = document.createElement(\"link\");\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.rel = \"stylesheet\";\n",
       "      element.type = \"text/css\";\n",
       "      element.href = url;\n",
       "      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
       "      document.body.appendChild(element);\n",
       "    }\n",
       "\n",
       "    var skip = [];\n",
       "    if (window.requirejs) {\n",
       "      require([], function() {\n",
       "      })\n",
       "    }\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
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       "      if (skip.indexOf(url) >= 0) { on_load(); continue; }\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "\tif (!js_urls.length) {\n",
       "      on_load()\n",
       "    }\n",
       "  };\n",
       "\n",
       "  function inject_raw_css(css) {\n",
       "    const element = document.createElement(\"style\");\n",
       "    element.appendChild(document.createTextNode(css));\n",
       "    document.body.appendChild(element);\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.2.3.min.js\", \"https://unpkg.com/@holoviz/panel@^0.10.2/dist/panel.min.js\"];\n",
       "  var css_urls = [\"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/json.css\"];\n",
       "\n",
       "  var inline_js = [\n",
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       "      Bokeh.set_log_level(\"info\");\n",
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       "    function(Bokeh) {} // ensure no trailing comma for IE\n",
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       "\n",
       "  function run_inline_js() {\n",
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       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
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       "    }\n",
       "  }\n",
       "\n",
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       "    console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
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       "  } else {\n",
       "    load_libs(css_urls, js_urls, function() {\n",
       "      console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "      run_inline_js();\n",
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       "  }\n",
       "}(window));"
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     "metadata": {},
     "output_type": "display_data"
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     "data": {
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       "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n",
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       "        });\n",
       "      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
       "        window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n",
       "          comm.onMsg = msg_handler;\n",
       "        });\n",
       "      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
       "        google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n",
       "          var messages = comm.messages[Symbol.asyncIterator]();\n",
       "          function processIteratorResult(result) {\n",
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       "\n",
       "    JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n",
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       "      } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
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       "        if (msg_handler) {\n",
       "          comm.on_msg(msg_handler);\n",
       "        }\n",
       "      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
       "        var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n",
       "        comm.open();\n",
       "        if (msg_handler) {\n",
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       "      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
       "        var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
       "        comm_promise.then((comm) => {\n",
       "          window.PyViz.comms[comm_id] = comm;\n",
       "          if (msg_handler) {\n",
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       "              var content = {data: message.data};\n",
       "              var metadata = message.metadata || {comm_id};\n",
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       "            return messages.next().then(processIteratorResult);\n",
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       "        }) \n",
       "        var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
       "          return comm_promise.then((comm) => {\n",
       "            comm.send(data, metadata, buffers, disposeOnDone);\n",
       "          });\n",
       "        };\n",
       "        var comm = {\n",
       "          send: sendClosure\n",
       "        };\n",
       "      }\n",
       "      window.PyViz.comms[comm_id] = comm;\n",
       "      return comm;\n",
       "    }\n",
       "    window.PyViz.comm_manager = new JupyterCommManager();\n",
       "    \n",
       "\n",
       "\n",
       "var JS_MIME_TYPE = 'application/javascript';\n",
       "var HTML_MIME_TYPE = 'text/html';\n",
       "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
       "var CLASS_NAME = 'output';\n",
       "\n",
       "/**\n",
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       " */\n",
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       "  var div = document.createElement(\"div\");\n",
       "  var script = document.createElement(\"script\");\n",
       "  node.appendChild(div);\n",
       "  node.appendChild(script);\n",
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       "/**\n",
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       " */\n",
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       "  var output_area = handle.output_area;\n",
       "  var output = handle.output;\n",
       "  if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
       "    return\n",
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       "  var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
       "  var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
       "  if (id !== undefined) {\n",
       "    var nchildren = toinsert.length;\n",
       "    var html_node = toinsert[nchildren-1].children[0];\n",
       "    html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "    var scripts = [];\n",
       "    var nodelist = html_node.querySelectorAll(\"script\");\n",
       "    for (var i in nodelist) {\n",
       "      if (nodelist.hasOwnProperty(i)) {\n",
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       "    }\n",
       "\n",
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       "      var newScript = document.createElement(\"script\");\n",
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       "      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
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       "    if (JS_MIME_TYPE in output.data) {\n",
       "      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
       "    }\n",
       "    output_area._hv_plot_id = id;\n",
       "    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
       "      window.PyViz.plot_index[id] = Bokeh.index[id];\n",
       "    } else {\n",
       "      window.PyViz.plot_index[id] = null;\n",
       "    }\n",
       "  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
       "    var bk_div = document.createElement(\"div\");\n",
       "    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "    var script_attrs = bk_div.children[0].attributes;\n",
       "    for (var i = 0; i < script_attrs.length; i++) {\n",
       "      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
       "    }\n",
       "    // store reference to server id on output_area\n",
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       "\n",
       "/**\n",
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       " */\n",
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       "  var id = handle.cell.output_area._hv_plot_id;\n",
       "  var server_id = handle.cell.output_area._bokeh_server_id;\n",
       "  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
       "  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
       "  if (server_id !== null) {\n",
       "    comm.send({event_type: 'server_delete', 'id': server_id});\n",
       "    return;\n",
       "  } else if (comm !== null) {\n",
       "    comm.send({event_type: 'delete', 'id': id});\n",
       "  }\n",
       "  delete PyViz.plot_index[id];\n",
       "  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
       "    var doc = window.Bokeh.index[id].model.document\n",
       "    doc.clear();\n",
       "    const i = window.Bokeh.documents.indexOf(doc);\n",
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       "      window.Bokeh.documents.splice(i, 1);\n",
       "    }\n",
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       "\n",
       "/**\n",
       " * Handle kernel restart event\n",
       " */\n",
       "function handle_kernel_cleanup(event, handle) {\n",
       "  delete PyViz.comms[\"hv-extension-comm\"];\n",
       "  window.PyViz.plot_index = {}\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle update_display_data messages\n",
       " */\n",
       "function handle_update_output(event, handle) {\n",
       "  handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
       "  handle_add_output(event, handle)\n",
       "}\n",
       "\n",
       "function register_renderer(events, OutputArea) {\n",
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       "    // create a DOM node to render to\n",
       "    var toinsert = this.create_output_subarea(\n",
       "    metadata,\n",
       "    CLASS_NAME,\n",
       "    EXEC_MIME_TYPE\n",
       "    );\n",
       "    this.keyboard_manager.register_events(toinsert);\n",
       "    // Render to node\n",
       "    var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
       "    render(props, toinsert[0]);\n",
       "    element.append(toinsert);\n",
       "    return toinsert\n",
       "  }\n",
       "\n",
       "  events.on('output_added.OutputArea', handle_add_output);\n",
       "  events.on('output_updated.OutputArea', handle_update_output);\n",
       "  events.on('clear_output.CodeCell', handle_clear_output);\n",
       "  events.on('delete.Cell', handle_clear_output);\n",
       "  events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
       "\n",
       "  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
       "    safe: true,\n",
       "    index: 0\n",
       "  });\n",
       "}\n",
       "\n",
       "if (window.Jupyter !== undefined) {\n",
       "  try {\n",
       "    var events = require('base/js/events');\n",
       "    var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
       "    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
       "      register_renderer(events, OutputArea);\n",
       "    }\n",
       "  } catch(err) {\n",
       "  }\n",
       "}\n"
      ],
      "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n  window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n    function JupyterCommManager() {\n    }\n\n    JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n      if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n        comm_manager.register_target(comm_id, function(comm) {\n          comm.on_msg(msg_handler);\n        });\n      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n        window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n          comm.onMsg = msg_handler;\n        });\n      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n        google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n          var messages = comm.messages[Symbol.asyncIterator]();\n          function processIteratorResult(result) {\n            var message = result.value;\n            console.log(message)\n            var content = {data: message.data, comm_id};\n            var buffers = []\n            for (var buffer of message.buffers || []) {\n              buffers.push(new DataView(buffer))\n            }\n            var metadata = message.metadata || {};\n            var msg = {content, buffers, metadata}\n            msg_handler(msg);\n            return messages.next().then(processIteratorResult);\n          }\n          return messages.next().then(processIteratorResult);\n        })\n      }\n    }\n\n    JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n      if (comm_id in window.PyViz.comms) {\n        return window.PyViz.comms[comm_id];\n      } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n        var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n        if (msg_handler) {\n          comm.on_msg(msg_handler);\n        }\n      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n        var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n        comm.open();\n        if (msg_handler) {\n          comm.onMsg = msg_handler;\n        }\n      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n        var comm_promise = google.colab.kernel.comms.open(comm_id)\n        comm_promise.then((comm) => {\n          window.PyViz.comms[comm_id] = comm;\n          if (msg_handler) {\n            var messages = comm.messages[Symbol.asyncIterator]();\n            function processIteratorResult(result) {\n              var message = result.value;\n              var content = {data: message.data};\n              var metadata = message.metadata || {comm_id};\n              var msg = {content, metadata}\n              msg_handler(msg);\n              return messages.next().then(processIteratorResult);\n            }\n            return messages.next().then(processIteratorResult);\n          }\n        }) \n        var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n          return comm_promise.then((comm) => {\n            comm.send(data, metadata, buffers, disposeOnDone);\n          });\n        };\n        var comm = {\n          send: sendClosure\n        };\n      }\n      window.PyViz.comms[comm_id] = comm;\n      return comm;\n    }\n    window.PyViz.comm_manager = new JupyterCommManager();\n    \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n  var div = document.createElement(\"div\");\n  var script = document.createElement(\"script\");\n  node.appendChild(div);\n  node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n  var output_area = handle.output_area;\n  var output = handle.output;\n  if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n    return\n  }\n  var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n  var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n  if (id !== undefined) {\n    var nchildren = toinsert.length;\n    var html_node = toinsert[nchildren-1].children[0];\n    html_node.innerHTML = output.data[HTML_MIME_TYPE];\n    var scripts = [];\n    var nodelist = html_node.querySelectorAll(\"script\");\n    for (var i in nodelist) {\n      if (nodelist.hasOwnProperty(i)) {\n        scripts.push(nodelist[i])\n      }\n    }\n\n    scripts.forEach( function (oldScript) {\n      var newScript = document.createElement(\"script\");\n      var attrs = [];\n      var nodemap = oldScript.attributes;\n      for (var j in nodemap) {\n        if (nodemap.hasOwnProperty(j)) {\n          attrs.push(nodemap[j])\n        }\n      }\n      attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n      oldScript.parentNode.replaceChild(newScript, oldScript);\n    });\n    if (JS_MIME_TYPE in output.data) {\n      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n    }\n    output_area._hv_plot_id = id;\n    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n      window.PyViz.plot_index[id] = Bokeh.index[id];\n    } else {\n      window.PyViz.plot_index[id] = null;\n    }\n  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n    var bk_div = document.createElement(\"div\");\n    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n    var script_attrs = bk_div.children[0].attributes;\n    for (var i = 0; i < script_attrs.length; i++) {\n      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n    }\n    // store reference to server id on output_area\n    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n  }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n  var id = handle.cell.output_area._hv_plot_id;\n  var server_id = handle.cell.output_area._bokeh_server_id;\n  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n  if (server_id !== null) {\n    comm.send({event_type: 'server_delete', 'id': server_id});\n    return;\n  } else if (comm !== null) {\n    comm.send({event_type: 'delete', 'id': id});\n  }\n  delete PyViz.plot_index[id];\n  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n    var doc = window.Bokeh.index[id].model.document\n    doc.clear();\n    const i = window.Bokeh.documents.indexOf(doc);\n    if (i > -1) {\n      window.Bokeh.documents.splice(i, 1);\n    }\n  }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n  delete PyViz.comms[\"hv-extension-comm\"];\n  window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n  handle_clear_output(event, {cell: {output_area: handle.output_area}})\n  handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n  function append_mime(data, metadata, element) {\n    // create a DOM node to render to\n    var toinsert = this.create_output_subarea(\n    metadata,\n    CLASS_NAME,\n    EXEC_MIME_TYPE\n    );\n    this.keyboard_manager.register_events(toinsert);\n    // Render to node\n    var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n    render(props, toinsert[0]);\n    element.append(toinsert);\n    return toinsert\n  }\n\n  events.on('output_added.OutputArea', handle_add_output);\n  events.on('output_updated.OutputArea', handle_update_output);\n  events.on('clear_output.CodeCell', handle_clear_output);\n  events.on('delete.Cell', handle_clear_output);\n  events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n    safe: true,\n    index: 0\n  });\n}\n\nif (window.Jupyter !== undefined) {\n  try {\n    var events = require('base/js/events');\n    var OutputArea = require('notebook/js/outputarea').OutputArea;\n    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n      register_renderer(events, OutputArea);\n    }\n  } catch(err) {\n  }\n}\n"
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(root) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n",
       "    root._bokeh_onload_callbacks = [];\n",
       "    root._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    root._bokeh_timeout = Date.now() + 5000;\n",
       "    root._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  function run_callbacks() {\n",
       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) {\n",
       "        if (callback != null)\n",
       "          callback();\n",
       "      });\n",
       "    } finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.debug(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(css_urls, js_urls, callback) {\n",
       "    if (css_urls == null) css_urls = [];\n",
       "    if (js_urls == null) js_urls = [];\n",
       "\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    root._bokeh_is_loading = css_urls.length + js_urls.length;\n",
       "\n",
       "    function on_load() {\n",
       "      root._bokeh_is_loading--;\n",
       "      if (root._bokeh_is_loading === 0) {\n",
       "        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
       "        run_callbacks()\n",
       "      }\n",
       "    }\n",
       "\n",
       "    function on_error() {\n",
       "      console.error(\"failed to load \" + url);\n",
       "    }\n",
       "\n",
       "    for (var i = 0; i < css_urls.length; i++) {\n",
       "      var url = css_urls[i];\n",
       "      const element = document.createElement(\"link\");\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.rel = \"stylesheet\";\n",
       "      element.type = \"text/css\";\n",
       "      element.href = url;\n",
       "      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
       "      document.body.appendChild(element);\n",
       "    }\n",
       "\n",
       "    var skip = [];\n",
       "    if (window.requirejs) {\n",
       "      require([], function() {\n",
       "      })\n",
       "    }\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      if (skip.indexOf(url) >= 0) { on_load(); continue; }\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "\tif (!js_urls.length) {\n",
       "      on_load()\n",
       "    }\n",
       "  };\n",
       "\n",
       "  function inject_raw_css(css) {\n",
       "    const element = document.createElement(\"style\");\n",
       "    element.appendChild(document.createTextNode(css));\n",
       "    document.body.appendChild(element);\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.2.3.min.js\", \"https://unpkg.com/@holoviz/panel@^0.10.2/dist/panel.min.js\"];\n",
       "  var css_urls = [\"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/json.css\"];\n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    function(Bokeh) {} // ensure no trailing comma for IE\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    if ((root.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i].call(root, root.Bokeh);\n",
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     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "JSON configuration loaded for sensor.\n",
      "DummySensor initialized.\n"
     ]
    }
   ],
   "source": [
    "#Import Sensor\n",
    "from sandbox.sensor import Sensor\n",
    "sensor = Sensor(calibsensor=_calibsensor, \n",
    "                name=\"dummy\", \n",
    "                gauss_filter=False) #For this module, the sharper the edges, the better the reflexions can be seen.\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "JSON configuration loaded for projector.\n"
     ]
    },
    {
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       "\n",
       "/**\n",
       " * Handle when a new output is added\n",
       " */\n",
       "function handle_add_output(event, handle) {\n",
       "  var output_area = handle.output_area;\n",
       "  var output = handle.output;\n",
       "  if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
       "    return\n",
       "  }\n",
       "  var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
       "  var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
       "  if (id !== undefined) {\n",
       "    var nchildren = toinsert.length;\n",
       "    var html_node = toinsert[nchildren-1].children[0];\n",
       "    html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "    var scripts = [];\n",
       "    var nodelist = html_node.querySelectorAll(\"script\");\n",
       "    for (var i in nodelist) {\n",
       "      if (nodelist.hasOwnProperty(i)) {\n",
       "        scripts.push(nodelist[i])\n",
       "      }\n",
       "    }\n",
       "\n",
       "    scripts.forEach( function (oldScript) {\n",
       "      var newScript = document.createElement(\"script\");\n",
       "      var attrs = [];\n",
       "      var nodemap = oldScript.attributes;\n",
       "      for (var j in nodemap) {\n",
       "        if (nodemap.hasOwnProperty(j)) {\n",
       "          attrs.push(nodemap[j])\n",
       "        }\n",
       "      }\n",
       "      attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
       "      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
       "      oldScript.parentNode.replaceChild(newScript, oldScript);\n",
       "    });\n",
       "    if (JS_MIME_TYPE in output.data) {\n",
       "      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
       "    }\n",
       "    output_area._hv_plot_id = id;\n",
       "    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
       "      window.PyViz.plot_index[id] = Bokeh.index[id];\n",
       "    } else {\n",
       "      window.PyViz.plot_index[id] = null;\n",
       "    }\n",
       "  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
       "    var bk_div = document.createElement(\"div\");\n",
       "    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "    var script_attrs = bk_div.children[0].attributes;\n",
       "    for (var i = 0; i < script_attrs.length; i++) {\n",
       "      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
       "    }\n",
       "    // store reference to server id on output_area\n",
       "    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
       "  }\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle when an output is cleared or removed\n",
       " */\n",
       "function handle_clear_output(event, handle) {\n",
       "  var id = handle.cell.output_area._hv_plot_id;\n",
       "  var server_id = handle.cell.output_area._bokeh_server_id;\n",
       "  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
       "  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
       "  if (server_id !== null) {\n",
       "    comm.send({event_type: 'server_delete', 'id': server_id});\n",
       "    return;\n",
       "  } else if (comm !== null) {\n",
       "    comm.send({event_type: 'delete', 'id': id});\n",
       "  }\n",
       "  delete PyViz.plot_index[id];\n",
       "  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
       "    var doc = window.Bokeh.index[id].model.document\n",
       "    doc.clear();\n",
       "    const i = window.Bokeh.documents.indexOf(doc);\n",
       "    if (i > -1) {\n",
       "      window.Bokeh.documents.splice(i, 1);\n",
       "    }\n",
       "  }\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle kernel restart event\n",
       " */\n",
       "function handle_kernel_cleanup(event, handle) {\n",
       "  delete PyViz.comms[\"hv-extension-comm\"];\n",
       "  window.PyViz.plot_index = {}\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle update_display_data messages\n",
       " */\n",
       "function handle_update_output(event, handle) {\n",
       "  handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
       "  handle_add_output(event, handle)\n",
       "}\n",
       "\n",
       "function register_renderer(events, OutputArea) {\n",
       "  function append_mime(data, metadata, element) {\n",
       "    // create a DOM node to render to\n",
       "    var toinsert = this.create_output_subarea(\n",
       "    metadata,\n",
       "    CLASS_NAME,\n",
       "    EXEC_MIME_TYPE\n",
       "    );\n",
       "    this.keyboard_manager.register_events(toinsert);\n",
       "    // Render to node\n",
       "    var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
       "    render(props, toinsert[0]);\n",
       "    element.append(toinsert);\n",
       "    return toinsert\n",
       "  }\n",
       "\n",
       "  events.on('output_added.OutputArea', handle_add_output);\n",
       "  events.on('output_updated.OutputArea', handle_update_output);\n",
       "  events.on('clear_output.CodeCell', handle_clear_output);\n",
       "  events.on('delete.Cell', handle_clear_output);\n",
       "  events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
       "\n",
       "  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
       "    safe: true,\n",
       "    index: 0\n",
       "  });\n",
       "}\n",
       "\n",
       "if (window.Jupyter !== undefined) {\n",
       "  try {\n",
       "    var events = require('base/js/events');\n",
       "    var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
       "    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
       "      register_renderer(events, OutputArea);\n",
       "    }\n",
       "  } catch(err) {\n",
       "  }\n",
       "}\n"
      ],
      "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n  window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n    function JupyterCommManager() {\n    }\n\n    JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n      if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n        comm_manager.register_target(comm_id, function(comm) {\n          comm.on_msg(msg_handler);\n        });\n      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n        window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n          comm.onMsg = msg_handler;\n        });\n      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n        google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n          var messages = comm.messages[Symbol.asyncIterator]();\n          function processIteratorResult(result) {\n            var message = result.value;\n            console.log(message)\n            var content = {data: message.data, comm_id};\n            var buffers = []\n            for (var buffer of message.buffers || []) {\n              buffers.push(new DataView(buffer))\n            }\n            var metadata = message.metadata || {};\n            var msg = {content, buffers, metadata}\n            msg_handler(msg);\n            return messages.next().then(processIteratorResult);\n          }\n          return messages.next().then(processIteratorResult);\n        })\n      }\n    }\n\n    JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n      if (comm_id in window.PyViz.comms) {\n        return window.PyViz.comms[comm_id];\n      } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n        var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n        if (msg_handler) {\n          comm.on_msg(msg_handler);\n        }\n      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n        var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n        comm.open();\n        if (msg_handler) {\n          comm.onMsg = msg_handler;\n        }\n      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n        var comm_promise = google.colab.kernel.comms.open(comm_id)\n        comm_promise.then((comm) => {\n          window.PyViz.comms[comm_id] = comm;\n          if (msg_handler) {\n            var messages = comm.messages[Symbol.asyncIterator]();\n            function processIteratorResult(result) {\n              var message = result.value;\n              var content = {data: message.data};\n              var metadata = message.metadata || {comm_id};\n              var msg = {content, metadata}\n              msg_handler(msg);\n              return messages.next().then(processIteratorResult);\n            }\n            return messages.next().then(processIteratorResult);\n          }\n        }) \n        var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n          return comm_promise.then((comm) => {\n            comm.send(data, metadata, buffers, disposeOnDone);\n          });\n        };\n        var comm = {\n          send: sendClosure\n        };\n      }\n      window.PyViz.comms[comm_id] = comm;\n      return comm;\n    }\n    window.PyViz.comm_manager = new JupyterCommManager();\n    \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n  var div = document.createElement(\"div\");\n  var script = document.createElement(\"script\");\n  node.appendChild(div);\n  node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n  var output_area = handle.output_area;\n  var output = handle.output;\n  if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n    return\n  }\n  var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n  var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n  if (id !== undefined) {\n    var nchildren = toinsert.length;\n    var html_node = toinsert[nchildren-1].children[0];\n    html_node.innerHTML = output.data[HTML_MIME_TYPE];\n    var scripts = [];\n    var nodelist = html_node.querySelectorAll(\"script\");\n    for (var i in nodelist) {\n      if (nodelist.hasOwnProperty(i)) {\n        scripts.push(nodelist[i])\n      }\n    }\n\n    scripts.forEach( function (oldScript) {\n      var newScript = document.createElement(\"script\");\n      var attrs = [];\n      var nodemap = oldScript.attributes;\n      for (var j in nodemap) {\n        if (nodemap.hasOwnProperty(j)) {\n          attrs.push(nodemap[j])\n        }\n      }\n      attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n      oldScript.parentNode.replaceChild(newScript, oldScript);\n    });\n    if (JS_MIME_TYPE in output.data) {\n      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n    }\n    output_area._hv_plot_id = id;\n    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n      window.PyViz.plot_index[id] = Bokeh.index[id];\n    } else {\n      window.PyViz.plot_index[id] = null;\n    }\n  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n    var bk_div = document.createElement(\"div\");\n    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n    var script_attrs = bk_div.children[0].attributes;\n    for (var i = 0; i < script_attrs.length; i++) {\n      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n    }\n    // store reference to server id on output_area\n    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n  }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n  var id = handle.cell.output_area._hv_plot_id;\n  var server_id = handle.cell.output_area._bokeh_server_id;\n  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n  if (server_id !== null) {\n    comm.send({event_type: 'server_delete', 'id': server_id});\n    return;\n  } else if (comm !== null) {\n    comm.send({event_type: 'delete', 'id': id});\n  }\n  delete PyViz.plot_index[id];\n  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n    var doc = window.Bokeh.index[id].model.document\n    doc.clear();\n    const i = window.Bokeh.documents.indexOf(doc);\n    if (i > -1) {\n      window.Bokeh.documents.splice(i, 1);\n    }\n  }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n  delete PyViz.comms[\"hv-extension-comm\"];\n  window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n  handle_clear_output(event, {cell: {output_area: handle.output_area}})\n  handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n  function append_mime(data, metadata, element) {\n    // create a DOM node to render to\n    var toinsert = this.create_output_subarea(\n    metadata,\n    CLASS_NAME,\n    EXEC_MIME_TYPE\n    );\n    this.keyboard_manager.register_events(toinsert);\n    // Render to node\n    var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n    render(props, toinsert[0]);\n    element.append(toinsert);\n    return toinsert\n  }\n\n  events.on('output_added.OutputArea', handle_add_output);\n  events.on('output_updated.OutputArea', handle_update_output);\n  events.on('clear_output.CodeCell', handle_clear_output);\n  events.on('delete.Cell', handle_clear_output);\n  events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n  OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n    safe: true,\n    index: 0\n  });\n}\n\nif (window.Jupyter !== undefined) {\n  try {\n    var events = require('base/js/events');\n    var OutputArea = require('notebook/js/outputarea').OutputArea;\n    if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n      register_renderer(events, OutputArea);\n    }\n  } catch(err) {\n  }\n}\n"
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Launching server at http://localhost:35449\n",
      "Projector initialized and server started.\n",
      "Please position the browser window accordingly and enter fullscreen!\n"
     ]
    }
   ],
   "source": [
    "# Import projector\n",
    "from sandbox.projector import Projector\n",
    "projector = Projector(calibprojector=_calibprojector)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Initialize marker detection"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Using dummy arucos. Create your own aruco positions using .set_aruco_position() function\n",
      "using dummy aruco module\n",
      "Aruco module loaded\n",
      "Aruco detection ready\n"
     ]
    }
   ],
   "source": [
    "#Initialize the aruco detection\n",
    "from sandbox.markers import MarkerDetection\n",
    "aruco = MarkerDetection(sensor=sensor)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Initialize main thread for live update"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(root) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n",
       "    root._bokeh_onload_callbacks = [];\n",
       "    root._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    root._bokeh_timeout = Date.now() + 5000;\n",
       "    root._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  function run_callbacks() {\n",
       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) {\n",
       "        if (callback != null)\n",
       "          callback();\n",
       "      });\n",
       "    } finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.debug(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(css_urls, js_urls, callback) {\n",
       "    if (css_urls == null) css_urls = [];\n",
       "    if (js_urls == null) js_urls = [];\n",
       "\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    root._bokeh_is_loading = css_urls.length + js_urls.length;\n",
       "\n",
       "    function on_load() {\n",
       "      root._bokeh_is_loading--;\n",
       "      if (root._bokeh_is_loading === 0) {\n",
       "        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
       "        run_callbacks()\n",
       "      }\n",
       "    }\n",
       "\n",
       "    function on_error() {\n",
       "      console.error(\"failed to load \" + url);\n",
       "    }\n",
       "\n",
       "    for (var i = 0; i < css_urls.length; i++) {\n",
       "      var url = css_urls[i];\n",
       "      const element = document.createElement(\"link\");\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.rel = \"stylesheet\";\n",
       "      element.type = \"text/css\";\n",
       "      element.href = url;\n",
       "      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
       "      document.body.appendChild(element);\n",
       "    }\n",
       "\n",
       "    var skip = [];\n",
       "    if (window.requirejs) {\n",
       "      require([], function() {\n",
       "      })\n",
       "    }\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      if (skip.indexOf(url) >= 0) { on_load(); continue; }\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "\tif (!js_urls.length) {\n",
       "      on_load()\n",
       "    }\n",
       "  };\n",
       "\n",
       "  function inject_raw_css(css) {\n",
       "    const element = document.createElement(\"style\");\n",
       "    element.appendChild(document.createTextNode(css));\n",
       "    document.body.appendChild(element);\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.2.3.min.js\", \"https://unpkg.com/@holoviz/panel@^0.10.2/dist/panel.min.js\"];\n",
       "  var css_urls = [\"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/json.css\"];\n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      inject_raw_css(\"\\n    body {\\n      margin:0px;\\n      background-color: #FFFFFF;\\n    }\\n    .panel {\\n      background-color: #000000;\\n      overflow: hidden;\\n    }\\n    .bk.frame {\\n      background-color: #FFFFFF;\\n      color: #FFFFFF;\\n    }\\n    .bk.legend {\\n      background-color: #16425B;\\n      color: #CCCCCC;\\n    }\\n    .bk.hot {\\n      background-color: #2896A5;\\n      color: #CCCCCC;\\n    }\\n    .bk.profile {\\n      background-color: #40C1C7;\\n      color: #CCCCCC;\\n    }\\n    \");\n",
       "    },\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    function(Bokeh) {} // ensure no trailing comma for IE\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    if ((root.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i].call(root, root.Bokeh);\n",
       "      }} else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!root._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      root._bokeh_failed_load = true;\n",
       "    }\n",
       "  }\n",
       "\n",
       "  if (root._bokeh_is_loading === 0) {\n",
       "    console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "    run_inline_js();\n",
       "  } else {\n",
       "    load_libs(css_urls, js_urls, function() {\n",
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     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "from sandbox.main_thread import MainThread\n",
    "main = MainThread(sensor=sensor, projector=projector, aruco= aruco if 'aruco' in globals() else None)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Thread started or resumed...\n"
     ]
    }
   ],
   "source": [
    "# Start the thread \n",
    "main.run()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Control the features of the main thread"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "data": {},
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/vnd.holoviews_exec.v0+json": "",
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       "</div>\n",
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      "text/plain": [
       "Column\n",
       "    [0] Markdown(str)\n",
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       "            [0] Column\n",
       "                [0] Markdown(str)\n",
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       "                [6] IntInput(name='set a contour l..., value=15, value_throttled=15)\n",
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       "            [0] Column\n",
       "                [0] Markdown(str)\n",
       "                [1] Checkbox(name='Aruco Detection', value=True)\n",
       "                [2] Column\n",
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       "                    [1] Row\n",
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       "                            [0] Checkbox(name='Show aruco location', value=True)\n",
       "                            [1] Checkbox(name='Show aruco id', value=True)\n",
       "                            [2] Checkbox(name='Show line connecting a...)\n",
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       "                        [1] WidgetBox\n",
       "                            [0] Markdown(str)\n",
       "                            [1] Row\n",
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       "                                [1] IntInput(name='x coordinate', value=50, value_throttled=50, width=70)\n",
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       "            [1] Column\n",
       "                [0] Markdown(str)\n",
       "                [1] RadioButtonGroup(button_type='success', name='Thread controller', options=['Start', 'Stop'], value='Start')\n",
       "                [2] Checkbox(name='Check changes in fame')\n",
       "                [3] CrossSelector(definition_order=False, name='Module manager', options=['CmapModule', ...], value=['CmapModule', ...])\n",
       "                [4] Button(button_type='warning', name='Clear axes from p...)"
      ]
     },
     "execution_count": 8,
     "metadata": {
      "application/vnd.holoviews_exec.v0+json": {
       "id": "1025"
      }
     },
     "output_type": "execute_result"
    }
   ],
   "source": [
    "main.widget_plot_module()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Import the desired module"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Import the modules to use\n",
    "from sandbox.modules.devito import SeismicModule"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/javascript": [
       "\n",
       "(function(root) {\n",
       "  function now() {\n",
       "    return new Date();\n",
       "  }\n",
       "\n",
       "  var force = true;\n",
       "\n",
       "  if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n",
       "    root._bokeh_onload_callbacks = [];\n",
       "    root._bokeh_is_loading = undefined;\n",
       "  }\n",
       "\n",
       "  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
       "    root._bokeh_timeout = Date.now() + 5000;\n",
       "    root._bokeh_failed_load = false;\n",
       "  }\n",
       "\n",
       "  function run_callbacks() {\n",
       "    try {\n",
       "      root._bokeh_onload_callbacks.forEach(function(callback) {\n",
       "        if (callback != null)\n",
       "          callback();\n",
       "      });\n",
       "    } finally {\n",
       "      delete root._bokeh_onload_callbacks\n",
       "    }\n",
       "    console.debug(\"Bokeh: all callbacks have finished\");\n",
       "  }\n",
       "\n",
       "  function load_libs(css_urls, js_urls, callback) {\n",
       "    if (css_urls == null) css_urls = [];\n",
       "    if (js_urls == null) js_urls = [];\n",
       "\n",
       "    root._bokeh_onload_callbacks.push(callback);\n",
       "    if (root._bokeh_is_loading > 0) {\n",
       "      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
       "      return null;\n",
       "    }\n",
       "    if (js_urls == null || js_urls.length === 0) {\n",
       "      run_callbacks();\n",
       "      return null;\n",
       "    }\n",
       "    console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
       "    root._bokeh_is_loading = css_urls.length + js_urls.length;\n",
       "\n",
       "    function on_load() {\n",
       "      root._bokeh_is_loading--;\n",
       "      if (root._bokeh_is_loading === 0) {\n",
       "        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
       "        run_callbacks()\n",
       "      }\n",
       "    }\n",
       "\n",
       "    function on_error() {\n",
       "      console.error(\"failed to load \" + url);\n",
       "    }\n",
       "\n",
       "    for (var i = 0; i < css_urls.length; i++) {\n",
       "      var url = css_urls[i];\n",
       "      const element = document.createElement(\"link\");\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.rel = \"stylesheet\";\n",
       "      element.type = \"text/css\";\n",
       "      element.href = url;\n",
       "      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
       "      document.body.appendChild(element);\n",
       "    }\n",
       "\n",
       "    var skip = [];\n",
       "    if (window.requirejs) {\n",
       "      require([], function() {\n",
       "      })\n",
       "    }\n",
       "    for (var i = 0; i < js_urls.length; i++) {\n",
       "      var url = js_urls[i];\n",
       "      if (skip.indexOf(url) >= 0) { on_load(); continue; }\n",
       "      var element = document.createElement('script');\n",
       "      element.onload = on_load;\n",
       "      element.onerror = on_error;\n",
       "      element.async = false;\n",
       "      element.src = url;\n",
       "      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
       "      document.head.appendChild(element);\n",
       "    }\n",
       "\tif (!js_urls.length) {\n",
       "      on_load()\n",
       "    }\n",
       "  };\n",
       "\n",
       "  function inject_raw_css(css) {\n",
       "    const element = document.createElement(\"style\");\n",
       "    element.appendChild(document.createTextNode(css));\n",
       "    document.body.appendChild(element);\n",
       "  }\n",
       "\n",
       "  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.2.3.min.js\", \"https://unpkg.com/@holoviz/panel@^0.10.2/dist/panel.min.js\"];\n",
       "  var css_urls = [\"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/json.css\"];\n",
       "\n",
       "  var inline_js = [\n",
       "    function(Bokeh) {\n",
       "      inject_raw_css(\"\\n    body {\\n      margin:0px;\\n      background-color: #FFFFFF;\\n    }\\n    .panel {\\n      background-color: #000000;\\n      overflow: hidden;\\n    }\\n    .bk.frame {\\n      background-color: #FFFFFF;\\n      color: #FFFFFF;\\n    }\\n    .bk.legend {\\n      background-color: #16425B;\\n      color: #CCCCCC;\\n    }\\n    .bk.hot {\\n      background-color: #2896A5;\\n      color: #CCCCCC;\\n    }\\n    .bk.profile {\\n      background-color: #40C1C7;\\n      color: #CCCCCC;\\n    }\\n    \");\n",
       "    },\n",
       "    function(Bokeh) {\n",
       "      Bokeh.set_log_level(\"info\");\n",
       "    },\n",
       "    function(Bokeh) {} // ensure no trailing comma for IE\n",
       "  ];\n",
       "\n",
       "  function run_inline_js() {\n",
       "    if ((root.Bokeh !== undefined) || (force === true)) {\n",
       "      for (var i = 0; i < inline_js.length; i++) {\n",
       "        inline_js[i].call(root, root.Bokeh);\n",
       "      }} else if (Date.now() < root._bokeh_timeout) {\n",
       "      setTimeout(run_inline_js, 100);\n",
       "    } else if (!root._bokeh_failed_load) {\n",
       "      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
       "      root._bokeh_failed_load = true;\n",
       "    }\n",
       "  }\n",
       "\n",
       "  if (root._bokeh_is_loading === 0) {\n",
       "    console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
       "    run_inline_js();\n",
       "  } else {\n",
       "    load_libs(css_urls, js_urls, function() {\n",
       "      console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
       "      run_inline_js();\n",
       "    });\n",
       "  }\n",
       "}(window));"
      ],
      "application/vnd.holoviews_load.v0+json": "\n(function(root) {\n  function now() {\n    return new Date();\n  }\n\n  var force = true;\n\n  if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n    root._bokeh_onload_callbacks = [];\n    root._bokeh_is_loading = undefined;\n  }\n\n  if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n    root._bokeh_timeout = Date.now() + 5000;\n    root._bokeh_failed_load = false;\n  }\n\n  function run_callbacks() {\n    try {\n      root._bokeh_onload_callbacks.forEach(function(callback) {\n        if (callback != null)\n          callback();\n      });\n    } finally {\n      delete root._bokeh_onload_callbacks\n    }\n    console.debug(\"Bokeh: all callbacks have finished\");\n  }\n\n  function load_libs(css_urls, js_urls, callback) {\n    if (css_urls == null) css_urls = [];\n    if (js_urls == null) js_urls = [];\n\n    root._bokeh_onload_callbacks.push(callback);\n    if (root._bokeh_is_loading > 0) {\n      console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n      return null;\n    }\n    if (js_urls == null || js_urls.length === 0) {\n      run_callbacks();\n      return null;\n    }\n    console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n    root._bokeh_is_loading = css_urls.length + js_urls.length;\n\n    function on_load() {\n      root._bokeh_is_loading--;\n      if (root._bokeh_is_loading === 0) {\n        console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n        run_callbacks()\n      }\n    }\n\n    function on_error() {\n      console.error(\"failed to load \" + url);\n    }\n\n    for (var i = 0; i < css_urls.length; i++) {\n      var url = css_urls[i];\n      const element = document.createElement(\"link\");\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.rel = \"stylesheet\";\n      element.type = \"text/css\";\n      element.href = url;\n      console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n      document.body.appendChild(element);\n    }\n\n    var skip = [];\n    if (window.requirejs) {\n      require([], function() {\n      })\n    }\n    for (var i = 0; i < js_urls.length; i++) {\n      var url = js_urls[i];\n      if (skip.indexOf(url) >= 0) { on_load(); continue; }\n      var element = document.createElement('script');\n      element.onload = on_load;\n      element.onerror = on_error;\n      element.async = false;\n      element.src = url;\n      console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n      document.head.appendChild(element);\n    }\n\tif (!js_urls.length) {\n      on_load()\n    }\n  };\n\n  function inject_raw_css(css) {\n    const element = document.createElement(\"style\");\n    element.appendChild(document.createTextNode(css));\n    document.body.appendChild(element);\n  }\n\n  var js_urls = [\"https://cdn.bokeh.org/bokeh/release/bokeh-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.2.3.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.2.3.min.js\", \"https://unpkg.com/@holoviz/panel@^0.10.2/dist/panel.min.js\"];\n  var css_urls = [\"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.10.2/dist/css/json.css\"];\n\n  var inline_js = [\n    function(Bokeh) {\n      inject_raw_css(\"\\n    body {\\n      margin:0px;\\n      background-color: #FFFFFF;\\n    }\\n    .panel {\\n      background-color: #000000;\\n      overflow: hidden;\\n    }\\n    .bk.frame {\\n      background-color: #FFFFFF;\\n      color: #FFFFFF;\\n    }\\n    .bk.legend {\\n      background-color: #16425B;\\n      color: #CCCCCC;\\n    }\\n    .bk.hot {\\n      background-color: #2896A5;\\n      color: #CCCCCC;\\n    }\\n    .bk.profile {\\n      background-color: #40C1C7;\\n      color: #CCCCCC;\\n    }\\n    \");\n    },\n    function(Bokeh) {\n      Bokeh.set_log_level(\"info\");\n    },\n    function(Bokeh) {} // ensure no trailing comma for IE\n  ];\n\n  function run_inline_js() {\n    if ((root.Bokeh !== undefined) || (force === true)) {\n      for (var i = 0; i < inline_js.length; i++) {\n        inline_js[i].call(root, root.Bokeh);\n      }} else if (Date.now() < root._bokeh_timeout) {\n      setTimeout(run_inline_js, 100);\n    } else if (!root._bokeh_failed_load) {\n      console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n      root._bokeh_failed_load = true;\n    }\n  }\n\n  if (root._bokeh_is_loading === 0) {\n    console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n    run_inline_js();\n  } else {\n    load_libs(css_urls, js_urls, function() {\n      console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n      run_inline_js();\n    });\n  }\n}(window));"
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "application/javascript": [
       "\n",
       "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n",
       "  window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n",
       "}\n",
       "\n",
       "\n",
       "    function JupyterCommManager() {\n",
       "    }\n",
       "\n",
       "    JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n",
       "      if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
       "        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
       "        comm_manager.register_target(comm_id, function(comm) {\n",
       "          comm.on_msg(msg_handler);\n",
       "        });\n",
       "      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
       "        window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n",
       "          comm.onMsg = msg_handler;\n",
       "        });\n",
       "      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
       "        google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n",
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       "            msg_handler(msg);\n",
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       "        })\n",
       "      }\n",
       "    }\n",
       "\n",
       "    JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n",
       "      if (comm_id in window.PyViz.comms) {\n",
       "        return window.PyViz.comms[comm_id];\n",
       "      } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
       "        var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
       "        var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n",
       "        if (msg_handler) {\n",
       "          comm.on_msg(msg_handler);\n",
       "        }\n",
       "      } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
       "        var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n",
       "        comm.open();\n",
       "        if (msg_handler) {\n",
       "          comm.onMsg = msg_handler;\n",
       "        }\n",
       "      } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
       "        var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
       "        comm_promise.then((comm) => {\n",
       "          window.PyViz.comms[comm_id] = comm;\n",
       "          if (msg_handler) {\n",
       "            var messages = comm.messages[Symbol.asyncIterator]();\n",
       "            function processIteratorResult(result) {\n",
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       "              msg_handler(msg);\n",
       "              return messages.next().then(processIteratorResult);\n",
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       "          }\n",
       "        }) \n",
       "        var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
       "          return comm_promise.then((comm) => {\n",
       "            comm.send(data, metadata, buffers, disposeOnDone);\n",
       "          });\n",
       "        };\n",
       "        var comm = {\n",
       "          send: sendClosure\n",
       "        };\n",
       "      }\n",
       "      window.PyViz.comms[comm_id] = comm;\n",
       "      return comm;\n",
       "    }\n",
       "    window.PyViz.comm_manager = new JupyterCommManager();\n",
       "    \n",
       "\n",
       "\n",
       "var JS_MIME_TYPE = 'application/javascript';\n",
       "var HTML_MIME_TYPE = 'text/html';\n",
       "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
       "var CLASS_NAME = 'output';\n",
       "\n",
       "/**\n",
       " * Render data to the DOM node\n",
       " */\n",
       "function render(props, node) {\n",
       "  var div = document.createElement(\"div\");\n",
       "  var script = document.createElement(\"script\");\n",
       "  node.appendChild(div);\n",
       "  node.appendChild(script);\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle when a new output is added\n",
       " */\n",
       "function handle_add_output(event, handle) {\n",
       "  var output_area = handle.output_area;\n",
       "  var output = handle.output;\n",
       "  if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
       "    return\n",
       "  }\n",
       "  var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
       "  var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
       "  if (id !== undefined) {\n",
       "    var nchildren = toinsert.length;\n",
       "    var html_node = toinsert[nchildren-1].children[0];\n",
       "    html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "    var scripts = [];\n",
       "    var nodelist = html_node.querySelectorAll(\"script\");\n",
       "    for (var i in nodelist) {\n",
       "      if (nodelist.hasOwnProperty(i)) {\n",
       "        scripts.push(nodelist[i])\n",
       "      }\n",
       "    }\n",
       "\n",
       "    scripts.forEach( function (oldScript) {\n",
       "      var newScript = document.createElement(\"script\");\n",
       "      var attrs = [];\n",
       "      var nodemap = oldScript.attributes;\n",
       "      for (var j in nodemap) {\n",
       "        if (nodemap.hasOwnProperty(j)) {\n",
       "          attrs.push(nodemap[j])\n",
       "        }\n",
       "      }\n",
       "      attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
       "      newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
       "      oldScript.parentNode.replaceChild(newScript, oldScript);\n",
       "    });\n",
       "    if (JS_MIME_TYPE in output.data) {\n",
       "      toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
       "    }\n",
       "    output_area._hv_plot_id = id;\n",
       "    if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
       "      window.PyViz.plot_index[id] = Bokeh.index[id];\n",
       "    } else {\n",
       "      window.PyViz.plot_index[id] = null;\n",
       "    }\n",
       "  } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
       "    var bk_div = document.createElement(\"div\");\n",
       "    bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
       "    var script_attrs = bk_div.children[0].attributes;\n",
       "    for (var i = 0; i < script_attrs.length; i++) {\n",
       "      toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
       "    }\n",
       "    // store reference to server id on output_area\n",
       "    output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
       "  }\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle when an output is cleared or removed\n",
       " */\n",
       "function handle_clear_output(event, handle) {\n",
       "  var id = handle.cell.output_area._hv_plot_id;\n",
       "  var server_id = handle.cell.output_area._bokeh_server_id;\n",
       "  if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
       "  var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
       "  if (server_id !== null) {\n",
       "    comm.send({event_type: 'server_delete', 'id': server_id});\n",
       "    return;\n",
       "  } else if (comm !== null) {\n",
       "    comm.send({event_type: 'delete', 'id': id});\n",
       "  }\n",
       "  delete PyViz.plot_index[id];\n",
       "  if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
       "    var doc = window.Bokeh.index[id].model.document\n",
       "    doc.clear();\n",
       "    const i = window.Bokeh.documents.indexOf(doc);\n",
       "    if (i > -1) {\n",
       "      window.Bokeh.documents.splice(i, 1);\n",
       "    }\n",
       "  }\n",
       "}\n",
       "\n",
       "/**\n",
       " * Handle kernel restart event\n",
       " */\n",
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     "metadata": {},
     "output_type": "display_data"
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "LoadSaveTopoModule loaded succesfully\n",
      "SeismicModule loaded succesfully\n"
     ]
    }
   ],
   "source": [
    "seis = SeismicModule(extent = sensor.extent)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Add the module to the main thread"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "module Seis added to modules\n"
     ]
    }
   ],
   "source": [
    "main.add_module(name ='Seis', module=seis)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Now we can start the simulation"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {},
     "metadata": {},
     "output_type": "display_data"
    },
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snapshots:\",\"value\":\"/home/danielsk78/GitProjects/open_AR_Sandbox/sandbox/../notebooks/tutorials/06_LoadSaveTopoModule/saved_DEMs/\"},\"id\":\"1142\",\"type\":\"TextInput\"},{\"attributes\":{\"client_comm_id\":\"dc88ab7925b74d1ab1876491052061ce\",\"comm_id\":\"8710580e92e3425490628752e8378e55\",\"plot_id\":\"1114\"},\"id\":\"1181\",\"type\":\"panel.models.comm_manager.CommManager\"},{\"attributes\":{\"css_classes\":[\"markdown\"],\"margin\":[5,5,5,5],\"name\":\"Markdown00108\",\"text\":\"&lt;p&gt;&lt;b&gt;Take snapshot&lt;/b&gt;&lt;/p&gt;\"},\"id\":\"1124\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"disabled\":true,\"icon\":null,\"label\":\"\\u2b07\",\"margin\":[5,15,0,0],\"min_width\":25,\"subscribed_events\":[\"button_click\"],\"width\":25},\"id\":\"1155\",\"type\":\"Button\"},{\"attributes\":{\"children\":[{\"id\":\"1132\"},{\"id\":\"1133\"}],\"margin\":[0,0,0,0],\"name\":\"Column00125\"},\"id\":\"1131\",\"type\":\"Column\"},{\"attributes\":{\"button_type\":\"success\",\"icon\":null,\"label\":\"Load other\",\"margin\":[5,10,5,10],\"subscribed_events\":[\"button_click\"]},\"id\":\"1172\",\"type\":\"Button\"},{\"attributes\":{\"icon\":null,\"label\":\"<<\",\"margin\":[5,10,5,10],\"min_width\":50,\"subscribed_events\":[\"button_click\"],\"width\":50},\"id\":\"1166\",\"type\":\"Button\"},{\"attributes\":{\"button_type\":\"success\",\"icon\":null,\"label\":\"Snapshot\",\"margin\":[5,10,5,10],\"subscribed_events\":[\"button_click\"]},\"id\":\"1125\",\"type\":\"Button\"},{\"attributes\":{\"css_classes\":[\"markdown\"],\"margin\":[5,5,5,5],\"name\":\"Markdown00106\",\"text\":\"&lt;p&gt;&lt;b&gt;Modify box size &lt;/b&gt;&lt;/p&gt;\"},\"id\":\"1119\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"children\":[{\"id\":\"1158\"},{\"id\":\"1162\"},{\"id\":\"1168\"}],\"margin\":[0,0,0,0],\"name\":\"\",\"sizing_mode\":\"stretch_both\",\"width\":600},\"id\":\"1157\",\"type\":\"Row\"},{\"attributes\":{\"margin\":[5,10,5,10],\"value\":\"/home/danielsk78\",\"width_policy\":\"max\"},\"id\":\"1154\",\"type\":\"TextInput\"},{\"attributes\":{\"margin\":[0,0,0,0],\"tabs\":[{\"id\":\"1130\"},{\"id\":\"1138\"},{\"id\":\"1173\"},{\"id\":\"1180\"}]},\"id\":\"1114\",\"type\":\"Tabs\"},{\"attributes\":{\"css_classes\":[\"markdown\"],\"margin\":[5,5,5,5],\"name\":\"Markdown00174\",\"text\":\"&lt;p&gt;&lt;b&gt;Filename&lt;/b&gt;&lt;/p&gt;\"},\"id\":\"1176\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"child\":{\"id\":\"1115\"},\"name\":\"Column00116\",\"title\":\"Box widgets\"},\"id\":\"1130\",\"type\":\"Panel\"},{\"attributes\":{\"children\":[{\"id\":\"1134\"},{\"id\":\"1135\"},{\"id\":\"1136\"},{\"id\":\"1137\"}],\"css_classes\":[\"panel-widget-box\"],\"margin\":[5,5,5,5],\"name\":\"WidgetBox00122\"},\"id\":\"1133\",\"type\":\"Column\"},{\"attributes\":{\"css_classes\":[\"markdown\"],\"margin\":[5,5,5,5],\"name\":\"Markdown00159\",\"text\":\"&lt;h3&gt;Load widget&lt;/h3&gt;\"},\"id\":\"1140\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"margin\":[0,0,0,0],\"name\":\"Divider00152\",\"style\":{\"height\":\"100%\",\"width\":\"100%\"},\"text\":\"<hr style=\\\"margin: 0px\\\">\",\"width_policy\":\"fit\"},\"id\":\"1156\",\"type\":\"Div\"},{\"attributes\":{\"disabled\":true,\"margin\":[0,0,0,0],\"max_length\":5000,\"placeholder\":\"To select an item highlight it on the left and use the arrow button to move it to the right.\",\"sizing_mode\":\"stretch_both\"},\"id\":\"1171\",\"type\":\"TextAreaInput\"},{\"attributes\":{\"margin\":[0,0,10,0],\"placeholder\":\"Filter available options\",\"width_policy\":\"max\"},\"id\":\"1160\",\"type\":\"TextInput\"},{\"attributes\":{\"end\":208,\"format\":\"0[.]00\",\"margin\":[5,10,5,10],\"start\":0,\"title\":\"box height\",\"value\":150,\"value_throttled\":150},\"id\":\"1123\",\"type\":\"Slider\"}],\"root_ids\":[\"1114\",\"1181\"]},\"title\":\"Bokeh Application\",\"version\":\"2.2.3\"}};\n",
       "    var render_items = [{\"docid\":\"5f332aff-9c9f-4399-8755-72a7d2e79f9d\",\"root_ids\":[\"1114\"],\"roots\":{\"1114\":\"e92ac552-5de8-48c5-bde5-e312fec8f559\"}}];\n",
       "    root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "  }\n",
       "  if (root.Bokeh !== undefined && root.Bokeh.Panel !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined && root.Bokeh.Panel !== undefined) {\n",
       "        clearInterval(timer);\n",
       "        embed_document(root);\n",
       "      } else if (document.readyState == \"complete\") {\n",
       "        attempts++;\n",
       "        if (attempts > 100) {\n",
       "          clearInterval(timer);\n",
       "          console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\");\n",
       "        }\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);</script>"
      ],
      "text/plain": [
       "Tabs\n",
       "    [0] Column\n",
       "        [0] Markdown(str)\n",
       "        [1] Row\n",
       "            [0] Column\n",
       "                [0] Markdown(str)\n",
       "                [1] IntSlider(end=262, name='x box origin', value=40, value_throttled=40)\n",
       "                [2] IntSlider(end=208, name='y box origin', value=40, value_throttled=40)\n",
       "                [3] IntSlider(end=262, name='box width', value=200, value_throttled=200)\n",
       "                [4] IntSlider(end=208, name='box height', value=150, value_throttled=150)\n",
       "                [5] Markdown(str)\n",
       "                [6] Button(button_type='success', name='Snapshot')\n",
       "                [7] Markdown(str)\n",
       "                [8] RadioBoxGroup(name='Show in sandbox', options=['None', 'Show topography'...], value='None')\n",
       "            [1] Matplotlib(Figure, height=500)\n",
       "    [1] Column\n",
       "        [0] Markdown(str)\n",
       "        [1] WidgetBox\n",
       "            [0] Markdown(str)\n",
       "            [1] IntSlider(end=50, name='Release area width', start=1, value=10, value_throttled=10)\n",
       "            [2] IntSlider(end=50, name='Release area height', start=1, value=10, value_throttled=10)\n",
       "            [3] RadioButtonGroup(button_type='success', name='Show or erase the areas', options=['Show', 'Erase'])\n",
       "    [2] Column\n",
       "        [0] Markdown(str)\n",
       "        [1] Markdown(str)\n",
       "        [2] TextInput(name='Choose a folder t..., value='/home/danielsk78/GitProje...)\n",
       "        [3] Markdown(str)\n",
       "        [4] Button(name='Load Files in folder')\n",
       "        [5] Markdown(str)\n",
       "        [6] WidgetBox\n",
       "            [0] RadioBoxGroup(name='Available Topographies', options=['None'], value='None')\n",
       "        [7] Markdown(str)\n",
       "        [8] FileSelector(directory='/home/danielsk78')\n",
       "        [9] Button(button_type='success', name='Load other')\n",
       "    [3] Column\n",
       "        [0] Markdown(str)\n",
       "        [1] Markdown(str)\n",
       "        [2] TextInput(name='Choose a filename t..., value='/home/danielsk78/GitProje...)\n",
       "        [3] Markdown(str)\n",
       "        [4] Button(name='Save')"
      ]
     },
     "execution_count": 12,
     "metadata": {
      "application/vnd.holoviews_exec.v0+json": {
       "id": "1114"
      }
     },
     "output_type": "execute_result"
    }
   ],
   "source": [
    "#Set the area for the simulation by modifying the extent of the box\n",
    "seis.Load_Area.show_widgets()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 1) Create a velocity model based on the sandbox topography "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import matplotlib.pyplot as plt\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#We are going to perform the simulation offline. \n",
    "#This is because the simulation is breaking the thread of the sandbox\n",
    "main.stop()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "vp = seis.frame\n",
    "vmax = 5 # maximum velocity corresponding to the top part of the sandbox \n",
    "vmin = 2 # minimum velocity corresponding to the top part of the sandbox \n",
    "model = seis.create_velocity_model(vp, vmax = vmax, vmin = vmin)\n",
    "# The model have many other features to change - see documentation for more information"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.show_velocity(model)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 2) Create time axis - This will be the time duration of the model (Time step already defined by the model"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "t0 = 0\n",
    "tn =  800 # [ms]\n",
    "time_range = seis.create_time_axis(t0, tn)\n",
    "print(\"Simulation from %d to %d [ms], with step size of %.4f\" %(time_range.start, time_range.stop, time_range.step))\n",
    "print(\"Total amount of time-frames: %i\" %time_range.num)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 3) Create the time function so we can define the PDE to solve"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.create_time_function()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 4) Solve the PDE in a time-marching way updating u(t+dt) from the previous time step"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.solve_PDE()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 5) Insert a source term. Use the aruco markers to indicate the source point for the wavefields - Multiple arucos can be used"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# If no arucos, you can simulate an aruco marker with this command\n",
    "main.run()\n",
    "dict_position = {1:[70,70],2:[50,50]} \n",
    "frame = sensor.get_frame()\n",
    "aruco.set_aruco_position(dict_position, frame)\n",
    "main.stop()\n",
    "#Try running again if you can not see the arucos on the screen "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Insert the aruco markers as sources\n",
    "seis.insert_aruco_source()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# You should be able to see the aruco markers in the image below\n",
    "seis.show_velocity(seis.model, source=seis.src_coordinates)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 6) solve the PDE taking into account the source term"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.operator_and_solve()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# To visualize the solution in a specific time frame use:\n",
    "seis.timeslice = 300\n",
    "seis.show_wavefield(seis.timeslice)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 7) Optional: if you want to include some shot_record to view the seismic_trace if some recorders are placed"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# create the receivers\n",
    "rec = seis.create_receivers(name='rec', n_receivers=100, depth_receivers=20, show_receivers=False)\n",
    "rec"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Interpolate the receivers\n",
    "seis.interpolate_receiver(rec)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# solve and display the solution\n",
    "seis.operator_and_solve()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.show_velocity(seis.model, source=seis.src_coordinates,\n",
    "                       receiver=rec.coordinates.data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "seis.show_shotrecord(rec.data, seis.model, 0, 2000)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### 8) To see the results in the sandbox modify the following variables"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#start the thread\n",
    "main.run()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# To see the waves continuously propagating set self.real_time to True \n",
    "seis.real_time = True"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#To make the step size of the plotting faster or slower, \n",
    "#change the step size for the frame plotting. \n",
    "#Higher number mean faster plotting\n",
    "seis.framerate = 10"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#To hide the velocity plot form the sandbox change the flag\n",
    "seis.p_velocity = False\n",
    "\n",
    "\n",
    "#To hide the wavefield plot form the sandbox change the flag\n",
    "seis.p_wave = False"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.p_velocity = True\n",
    "seis.p_wave = True"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "#### 8.1) Is also possible to run the previous using widgets"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "seis.show_plotting_widgets()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Finally - All can be summarized with the widgets"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "data": {
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&quot; width=&quot;432px&quot; height=&quot;288px&quot; alt=&quot;&quot;&gt;&lt;/img&gt;\",\"width\":432},\"id\":\"1229\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"format\":null,\"margin\":[5,10,5,10],\"placeholder\":\"0\",\"step\":0.1,\"title\":\"vmax\",\"value\":5.0,\"value_throttled\":5.0},\"id\":\"1212\",\"type\":\"Spinner\"},{\"attributes\":{\"button_type\":\"success\",\"icon\":null,\"label\":\"Solve PDE\",\"margin\":[5,10,5,10],\"subscribed_events\":[\"button_click\"]},\"id\":\"1225\",\"type\":\"Button\"},{\"attributes\":{\"button_type\":\"success\",\"icon\":null,\"label\":\"Create velocity model\",\"margin\":[5,10,5,10],\"subscribed_events\":[\"button_click\"]},\"id\":\"1215\",\"type\":\"Button\"},{\"attributes\":{\"css_classes\":[\"markdown\"],\"margin\":[5,5,5,5],\"name\":\"Markdown00200\",\"text\":\"&lt;p&gt;Place aruco markers in position and click the button&lt;/p&gt;\"},\"id\":\"1221\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"css_classes\":[\"markdown\"],\"margin\":[5,5,5,5],\"name\":\"Markdown00213\",\"text\":\"&lt;p&gt;&lt;b&gt;Show Seismic wave in real time&lt;/b&gt;&lt;/p&gt;\"},\"id\":\"1230\",\"type\":\"panel.models.markup.HTML\"},{\"attributes\":{\"children\":[{\"id\":\"1227\"},{\"id\":\"1229\"},{\"id\":\"1230\"},{\"id\":\"1231\"},{\"id\":\"1232\"},{\"id\":\"1233\"},{\"id\":\"1234\"},{\"id\":\"1235\"},{\"id\":\"1236\"},{\"id\":\"1237\"},{\"id\":\"1238\"}],\"margin\":[0,0,0,0],\"name\":\"Column00219\"},\"id\":\"1226\",\"type\":\"Column\"},{\"attributes\":{\"format\":null,\"margin\":[5,10,5,10],\"placeholder\":\"0\",\"step\":0.01,\"title\":\"Wavefield threshold\",\"value\":0.03,\"value_throttled\":0.03},\"id\":\"1233\",\"type\":\"Spinner\"}],\"root_ids\":[\"1208\",\"1239\"]},\"title\":\"Bokeh Application\",\"version\":\"2.2.3\"}};\n",
       "    var render_items = [{\"docid\":\"ce18d0df-4d61-42fe-b249-d8d2164e1bcd\",\"root_ids\":[\"1208\"],\"roots\":{\"1208\":\"6888772c-0143-4dac-a9cb-1e9170e99e46\"}}];\n",
       "    root.Bokeh.embed.embed_items_notebook(docs_json, render_items);\n",
       "  }\n",
       "  if (root.Bokeh !== undefined && root.Bokeh.Panel !== undefined) {\n",
       "    embed_document(root);\n",
       "  } else {\n",
       "    var attempts = 0;\n",
       "    var timer = setInterval(function(root) {\n",
       "      if (root.Bokeh !== undefined && root.Bokeh.Panel !== undefined) {\n",
       "        clearInterval(timer);\n",
       "        embed_document(root);\n",
       "      } else if (document.readyState == \"complete\") {\n",
       "        attempts++;\n",
       "        if (attempts > 100) {\n",
       "          clearInterval(timer);\n",
       "          console.log(\"Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing\");\n",
       "        }\n",
       "      }\n",
       "    }, 10, root)\n",
       "  }\n",
       "})(window);</script>"
      ],
      "text/plain": [
       "Row\n",
       "    [0] Column\n",
       "        [0] Markdown(str)\n",
       "        [1] Markdown(str)\n",
       "        [2] FloatInput(name='vmax', value=5.0, value_throttled=5.0)\n",
       "        [3] FloatInput(name='vmin', value=2.0, value_throttled=2.0)\n",
       "        [4] IntInput(name='Damping thickness', value=40, value_throttled=40)\n",
       "        [5] Button(button_type='success', name='Create velocity model')\n",
       "        [6] Markdown(str)\n",
       "        [7] IntInput(name='t0', value_throttled=0)\n",
       "        [8] IntInput(name='tn', value=800, value_throttled=800)\n",
       "        [9] Button(button_type='success', name='Create time axis')\n",
       "        [10] Markdown(str)\n",
       "        [11] Markdown(str)\n",
       "        [12] FloatInput(name='Frequency (Hz)', step=1, value=25.0, value_throttled=25.0)\n",
       "        [13] Button(button_type='warning', name='Insert sources')\n",
       "        [14] Markdown(str)\n",
       "        [15] Button(button_type='success', name='Solve PDE')\n",
       "    [1] Column\n",
       "        [0] Markdown(str)\n",
       "        [1] Matplotlib(Figure, tight=True)\n",
       "        [2] Markdown(str)\n",
       "        [3] Checkbox(name='Real time', value=True)\n",
       "        [4] IntInput(name='Framerate', value=10, value_throttled=10)\n",
       "        [5] FloatInput(name='Wavefield threshold', step=0.01, value=0.03, value_throttled=0.03)\n",
       "        [6] Markdown(str)\n",
       "        [7] IntSlider(name='Wavefield in frame', value_throttled=0)\n",
       "        [8] Markdown(str)\n",
       "        [9] Checkbox(name='Velocity Model', value=True)\n",
       "        [10] Checkbox(name='Wavefield', value=True)"
      ]
     },
     "execution_count": 13,
     "metadata": {
      "application/vnd.holoviews_exec.v0+json": {
       "id": "1208"
      }
     },
     "output_type": "execute_result"
    }
   ],
   "source": [
    "seis.show_widgets()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#simulation_data = dict(vmax = 5.0,\n",
    "#                       vmin = 2.0, \n",
    "#                       t0 = 0,\n",
    "#                       tn = 1000,\n",
    "#                       nbl = 40, # size of the absorbing layer\n",
    "#                       smooth = False, # smoothing of the velocity model\n",
    "#                       sigma_x = 2, # if smoothing True\n",
    "#                       sigma_y = 2, # if smoothing True\n",
    "##                       spacing = (10, 10), # grid spacing in meters - for scaling the model\n",
    " #                      origin = (0, 0), # origin of the model \n",
    " #                     )\n",
    "#seis.insert_aruco_source()\n",
    "#seis.run_simulation(**simulation_data)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Stop sandbox\n",
    "\n",
    "\n",
    "\n",
    "\n",
    "\n",
    "\n",
    "main.stop()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.8"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 4
}