From c76aae1e1a7ecd5546b9a726c47e956c5aea6e9a Mon Sep 17 00:00:00 2001 From: Prathap Sridharan Date: Wed, 5 Jun 2024 15:37:24 -0700 Subject: [PATCH] Fix filepaths in notebook --- .../spatial_dev_tools/tiledbsoma_spatial_dataset_ingest.ipynb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/tools/cellxgene_census_builder/spatial_dev_tools/tiledbsoma_spatial_dataset_ingest.ipynb b/tools/cellxgene_census_builder/spatial_dev_tools/tiledbsoma_spatial_dataset_ingest.ipynb index 95eb16764..42424c98d 100644 --- a/tools/cellxgene_census_builder/spatial_dev_tools/tiledbsoma_spatial_dataset_ingest.ipynb +++ b/tools/cellxgene_census_builder/spatial_dev_tools/tiledbsoma_spatial_dataset_ingest.ipynb @@ -50,7 +50,9 @@ ], "source": [ "# NOTE: Replace value of `my_h5ad_path` with an appropriate path to a cellxgene h5ad spatial file\n", - "my_h5ad_path = \"../../../ps_stuff/spatial_test_datasets/c63d5cb4-1046-4948-a188-e6af50ef90f4.h5ad\"\n", + "my_h5ad_path = (\n", + " \"/Users/psridharan/code/cellxgene-census/ps_stuff/spatial_test_datasets/c63d5cb4-1046-4948-a188-e6af50ef90f4.h5ad\"\n", + ")\n", "\n", "from_cxg_spatial_h5ad(\n", " input_h5ad_path=my_h5ad_path,\n",