_pkgdown.yml

url: https://chjackson.github.io/msm/
template:
  bootstrap: 5
reference:
- title: Summarising data
- contents:
  - statetable.msm
- title: Fitting models
- contents:
  - msm
  - crudeinits.msm
  - hmm-dists
  - hmmMV
  - msm2Surv
- title: Output from fitted models
- contents:
  - qmatrix.msm
  - pmatrix.msm
  - pmatrix.piecewise.msm
  - sojourn.msm
  - totlos.msm
  - pnext.msm
  - ppass.msm
  - efpt.msm
  - qratio.msm
  - hazard.msm
  - coef.msm
  - boot.msm
  - ematrix.msm
  - odds.msm
  - viterbi.msm
  - phasemeans.msm
  - plot.msm
  - print.msm
  - printold.msm
  - summary.msm
  - print.summary.msm
  - msm.form.qoutput
  - msm.form.eoutput
- title: Tidy model outputs
- contents:
  - tidy.msm
  - tidy.msm.est
  - tidy.msm.estbystate
  - tidy.msm.prevalence
- title: Model checking and comparison
- contents:
  - prevalence.msm
  - plot.prevalence.msm
  - plot.survfit.msm
  - plotprog.msm
  - logLik.msm
  - lrtest.msm
  - pearson.msm
  - draic.msm
  - drlcv.msm
  - scoreresid.msm
  - surface.msm
- title: Simulation of data
- contents:
  - sim.msm
  - simmulti.msm
  - simfitted.msm
- title: Probability distributions
- contents:
  - pexp
  - tnorm
  - twophase
  - medists
  - qgeneric
- title: Datasets
- contents:
  - cav
  - psor
  - aneur
  - bos
  - bos3
  - bos4
  - fev
- title: Miscellaneous utilities
- contents:
  - deltamethod
  - MatrixExp
  - model.frame.msm
  - recreate.olddata
  - transient.msm
  - hmodel2list
- title: Package internals (advanced)
- contents:
  - msm.object
  - cmodel.object
  - qmodel.object
  - qcmodel.object
  - emodel.object
  - ecmodel.object
  - hmodel.object
  - paramdata.object
  - updatepars.msm
- title: Package overview
- contents:
  - msm-package