You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm trying to calculate the PMF of the distance between the C-terminal and N-terminal of a protein after performing umbrella sampling simulations where I pulled the protein apart. I ran simulations, each with a harmonic restraint to sample different distances between the C-term and N-term.
And then I've modified the example/umbrella-sampling-fes/umbrella-sampling.py script to fit my data, but I'm encountering an error that I'm not able to diagnose as below
Could someone help me understand what might be causing this error?
Attached is the time series data files from simulation and my python script.
The text was updated successfully, but these errors were encountered:
Byun-jinyoung
changed the title
Issue calculating FES between protein C-term and N-term using modified umbrella sampling script
Issue calculating FES from umbrella sampling with CV between protein C-term and N-term
Jul 3, 2024
Hello,
I'm trying to calculate the PMF of the distance between the C-terminal and N-terminal of a protein after performing umbrella sampling simulations where I pulled the protein apart. I ran simulations, each with a harmonic restraint to sample different distances between the C-term and N-term.
And then I've modified the
example/umbrella-sampling-fes/umbrella-sampling.py
script to fit my data, but I'm encountering an error that I'm not able to diagnose as belowCould someone help me understand what might be causing this error?
Attached is the time series data files from simulation and my python script.
pymbar_us
Best regards,
Jinyoung
The text was updated successfully, but these errors were encountered: