.travis.yml

language: c

# use containers
sudo: false

addons:
  apt:
    sources:
    - r-packages-precise
    packages:
    - r-base-dev
    - r-recommended
    - pandoc
    - default-jdk
    - default-jre

# cache local R libraries directory:
cache:
  directories:
    - ~/Rlib

# install the package and dependencies:
install:
  - mkdir -p ~/Rlib
  - echo 'R_LIBS=~/Rlib' > .Renviron
  - echo 'options(repos = "http://cran.rstudio.com")' > .Rprofile
  - mkdir -p ~/.R
  - Rscript -e 'if(!"devtools" %in% rownames(installed.packages())) { install.packages("devtools", dependencies = TRUE) }'
  - Rscript -e 'if (!require("covr")) devtools::install_github("jimhester/covr")'
  - Rscript -e 'if (!require("drat")) install.packages("drat")'
  - Rscript -e 'if(!"rJava" %in% rownames(installed.packages())) { install.packages("rJava", dependencies = TRUE) }'
  - Rscript -e 'if(!"testthat" %in% rownames(installed.packages())) { install.packages("testthat", dependencies = TRUE) }'
  - Rscript -e 'if(!"pROC" %in% rownames(installed.packages())) { install.packages("pROC", dependencies = TRUE) }'
  - Rscript -e 'if(!"gnm" %in% rownames(installed.packages())) { install.packages("gnm", dependencies = TRUE) }'
  - Rscript -e 'if(!"knitr" %in% rownames(installed.packages())) { install.packages("knitr", dependencies = TRUE) }'
  - Rscript -e 'if(!"rmarkdown" %in% rownames(installed.packages())) { install.packages("rmarkdown", dependencies = TRUE) }'
  - Rscript -e 'if(!"EmpiricalCalibration" %in% rownames(installed.packages())) { install.packages("EmpiricalCalibration", dependencies = TRUE) }'
  - Rscript -e 'if(!"ggplot2" %in% rownames(installed.packages())) { install.packages("ggplot2", dependencies = TRUE) }'
  - Rscript -e 'if(!"bit" %in% rownames(installed.packages())) { install.packages("bit", dependencies = TRUE) }'
  - Rscript -e 'if(!"ff" %in% rownames(installed.packages())) { install.packages("ff", dependencies = TRUE) }'
  - Rscript -e 'if(!"ffbase" %in% rownames(installed.packages())) { install.packages("ffbase", dependencies = TRUE) }'
  - Rscript -e 'if(!"plyr" %in% rownames(installed.packages())) { install.packages("plyr", dependencies = TRUE) }'
  - Rscript -e 'if(!"survAUC" %in% rownames(installed.packages())) { install.packages("survAUC", dependencies = TRUE) }'
  - Rscript -e 'if(!"RJDBC" %in% rownames(installed.packages())) { install.packages("RJDBC", dependencies = TRUE) }'
  - Rscript -e 'if(!"survival" %in% rownames(installed.packages())) { install.packages("survival", dependencies = TRUE) }'
  - Rscript -e 'if(!"Cyclops" %in% rownames(installed.packages())) { install.packages("Cyclops", dependencies = TRUE) }'

  # Install OHDSI dependencies
  - Rscript -e 'devtools::install_github("OHDSI/OhdsiRTools")'
  - Rscript -e 'devtools::install_github("OHDSI/SqlRender")'
  - Rscript -e 'devtools::install_github("OHDSI/DatabaseConnector")'
  - Rscript -e 'devtools::install_github("OHDSI/FeatureExtraction")'

  - Rscript -e 'update.packages(ask = FALSE, instlib = "~/Rlib")'
  - Rscript -e 'devtools::install_deps(pkg = ".", dependencies = TRUE)'

before_script:
  - export PKG_NAME=$(Rscript -e 'cat(paste0(devtools::as.package(".")$package))')
  - export PKG_TARBALL=$(Rscript -e 'pkg <- devtools::as.package("."); cat(paste0(pkg$package,"_",pkg$version,".tar.gz"))')

# Build and check package
script:
  - R CMD build . --no-build-vignettes --no-manual
  - _R_CHECK_CRAN_INCOMING_=FALSE R CMD check "${PKG_TARBALL}" --no-build-vignettes --no-manual
  - cat ${PKG_NAME}.Rcheck/00install.out # Print out install / compile log

notifications:
  recipients:
    - msuchard@gmail.com
    - schuemie@ohdsi.org
  email:
    on_success: change
    on_failure: change

after_success:
  - Rscript -e 'library(covr);codecov()'
  # Rebuild docker container
  - curl --data "build=true" -X POST https://registry.hub.docker.com/u/ohdsi/broadsea-methodslibrary/trigger/f0b51cec-4027-4781-9383-4b38b42dd4f5/
  # Deploy to drat repo
  - test $TRAVIS_PULL_REQUEST == "false" && test $TRAVIS_BRANCH == "master" && bash deploy.sh

env:
  global:
  - secure: PiXvBNIYwsoV6XRx9MLNu2MOI6sgk/xgJO/T4FCCRC+0zBuNUUkvDN2mEKO8y2p+CgwXDq/JVq9gJb6NvwBf2lj7PDQwEuxU3j0Tinx56IdIrWbia98QW91b8F8+dg8M3FEt0BEPlbiDKqSjhqcv3fXOOoxT9QbQjaZaA1zkCAk=