This reference contains all methods currently available in CLIJ, CLIJ2 and CLIJx for spot detection.. Read more about CLIJs release cycle
Please note: CLIJ is deprecated. Make the transition to CLIJ2.
Method is available in CLIJ (deprecated release)
Method is available in CLIJ2 (stable release)
Method is available in CLIJx (experimental release)
Method is available in clEsperanto (experimental)
Categories: Binary, Filter, Graphs, Labels, Math, Matrices, Measurements, Projections, Transformations, Detection, CLIc
A,[B], C,[D], E,[F], G, H, I, J, K,[L],[M], N, O, P, Q, R,[S], T, U,[V], W, X, Y, Z
Determines pixels/voxels which are on the surface of binary objects and sets only them to 1 in the destination image. All other pixels are set to 0.
Determines maximum regions in a Gaussian blurred version of the original image.
Takes a labelmap and returns an image where all pixels on label edges are set to 1 and all other pixels to 0.
Detects local maxima in a given square/cubic neighborhood.
Detects local maxima in a given square/cubic neighborhood.
Detects local maxima in a given square neighborhood of an input image stack.
Detects local minima in a given square/cubic neighborhood.
Detects local minima in a given square/cubic neighborhood.
Detects local minima in a given square neighborhood of an input image stack.
Determine maxima with a given tolerance to surrounding maxima and background and label them.
Finds and labels local maxima with neighboring maxima and background above a given tolerance threshold.
Transforms a binary image with single pixles set to 1 to a labelled spots image.
Apply MorpholibJ's Extended Maxima to an image to produce an image where maxima regions are set to 255 and background to 0.
Apply MorpholibJ's Extended Minima to an image to produce an image where minima regions are set to 255 and background to 0.
Apply SimpleITKs Canny edge detection filter to an image.
Apply SimpleITKs ZeroCrossingBasedEdgeDetection to an image.
Transforms a spots image as resulting from maximum/minimum detection in an image where every column contains d pixels (with d = dimensionality of the original image) with the coordinates of the maxima/minima.
Labeles objects directly from grey-value images.
18 methods listed.