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reference_bonejSkeletonize3D.md

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bonejSkeletonize3D

Apply BoneJ Skeletonize a binary image in 3D.

Category: Binary

Availability: Available in Fiji by activating the update sites clij, clij2 and clijx-assistant-extensions. This function is part of clijx-assistant-bonej_-0.6.0.1.jar.

Usage in ImageJ macro

Ext.CLIJx_bonejSkeletonize3D(Image input, Image destination);

Usage in object oriented programming languages

Java 
// init CLIJ and GPU
import net.haesleinhuepf.clijx.CLIJx;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJx clijx = CLIJx.getInstance();

// get input parameters
ClearCLBuffer input = clijx.push(inputImagePlus);
destination = clijx.create(input);


// Execute operation on GPU
clijx.bonejSkeletonize3D(input, destination);

// show result
destinationImagePlus = clijx.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clijx.release(input);
clijx.release(destination);
Matlab 
% init CLIJ and GPU
clijx = init_clatlabx();

% get input parameters
input = clijx.pushMat(input_matrix);
destination = clijx.create(input);


% Execute operation on GPU
clijx.bonejSkeletonize3D(input, destination);

% show result
destination = clijx.pullMat(destination)

% cleanup memory on GPU
clijx.release(input);
clijx.release(destination);

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