Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Build Updates #6

Open
rajivnarayan opened this issue Sep 17, 2018 · 0 comments
Open

Build Updates #6

rajivnarayan opened this issue Sep 17, 2018 · 0 comments
Assignees

Comments

@rajivnarayan
Copy link
Contributor

Updates to Merino outputs, changes to naming conventions and metadata:

  • Update the metadata fields for cell_info.txt to match the fieldnames in
    /cmap/data/vdb/PRISM/cell_set_definitions/PRISM_PR500.CS5_definition.txt
  • Save ssmd_matrix as a gct file not a table.
  • Change post-ComBat files from .CB to .COMBAT
  • Output a list of Level 1 plates in level1_plates_n*.grp
  • Generate Level1 data tarball
  • Output a pert_info file with pert_id, pert_iname, pert_type, moa, target_name, smiles
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

2 participants