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I have the results from several cellranger count runs that are not in the cellranger output directory structure, for example:
. . ├── CM_P2 │ ├── barcodes.tsv.gz │ ├── features.tsv.gz │ ├── matrix.mtx.gz │ └── metrics_summary.csv ├── CM_P3 │ ├── barcodes.tsv.gz │ ├── features.tsv.gz │ ├── matrix.mtx.gz │ └── metrics_summary.csv . .
It looks like where importCellRanger looks for metrics_summary.csv is hardcoded in importCellRanger.R:
importCellRanger
metrics_summary <- .importMetricsCellRanger(samplePaths, sampleNames, "outs", "metrics_summary.csv")
Is there another way to get the summary into the SCE object with the singleCellTK API?
singleCellTK
The text was updated successfully, but these errors were encountered:
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I have the results from several cellranger count runs that are not in the cellranger output directory structure, for example:
It looks like where
importCellRangerlooks for metrics_summary.csv is hardcoded in importCellRanger.R:Is there another way to get the summary into the SCE object with the
singleCellTKAPI?The text was updated successfully, but these errors were encountered: