Problem running fmridenoise #88

manzouri · 2021-01-22T09:11:48Z

Hi,
I have installed fmridenoise latest version on centos. I run fmridenoise /home/amiman/Desktop/OUT/ and my subjects are located at /home/amiman/Desktop/OUT/derivatives/fmriprep/ , I get following :
fmridenoise /home/amiman/Desktop/OUT/
/home/amiman/anaconda3/lib/python3.7/site-packages/sklearn/feature_extraction/text.py:17: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working
from collections import Mapping, defaultdict
usage: fmridenoise [-h] [--version] {compare,dummy} ...
fmridenoise: error: invalid choice: '/home/amiman/Desktop/OUT/' (choose from 'compare', 'dummy')

SiegfriedWagner · 2021-01-22T17:38:37Z

Use fmridenoise compare {args} to run denoising and comparison between subjects.
fmridenoise compare --help should give better insight.
I suppose docs need improvements.

manzouri · 2021-01-26T13:58:29Z

Does it need large RAM , I try to run on 12 subjects and it crashes!

SiegfriedWagner · 2021-01-26T14:10:36Z

I took very conservative steps in memory estimations for each node but it may crash because of not enough ram (especially when raw image files are seizable).

If you have exceptions connected to low RAM you can try running fmridenoise without --MultiProc flag.

manzouri · 2021-01-26T14:43:57Z

I have 30 GB of RAM and not using --MultiProc . My task data acquired with MultiBand and TR=0.57 and 615 images. could it be the reason?

SiegfriedWagner · 2021-01-26T15:54:34Z

I have checked my mail and for reason unknown to me this traceback wasn't in this issue.

Hi and thanks. I run it now but get the following error.
(base) [amiman@vpspsy-t-srv01 fmriprep]$ fmridenoise compare /home/amiman/Desktop/OUT/ --pipelines pipeline-24HMP_8Phys_SpikeReg
/home/amiman/anaconda3/lib/python3.7/site-packages/sklearn/feature_extraction/text.py:17: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working
from collections import Mapping, defaultdict
210126-11:39:09,361 nipype.workflow INFO:
[Node] Setting-up "BidsValidate" in "/tmp/tmpxo3i0j7x/BidsValidate".
210126-11:39:09,364 nipype.workflow INFO:
[Node] Running "BidsValidate" ("fmridenoise.interfaces.bids.BIDSValidate")
/home/amiman/anaconda3/lib/python3.7/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the config_filename, ignore, force_index, and index_metadata arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments, and pass it to the BIDSLayout via the indexer argument.
warnings.warn("The ability to pass arguments to BIDSLayout that control "
/home/amiman/anaconda3/lib/python3.7/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the config_filename, ignore, force_index, and index_metadata arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments, and pass it to the BIDSLayout via the indexer argument.
warnings.warn("The ability to pass arguments to BIDSLayout that control "
210126-11:39:15,453 nipype.workflow INFO:
[Node] Finished "BidsValidate".
210126-11:39:15,668 nipype.workflow INFO:
Workflow fmridenoise_wf settings: ['check', 'execution', 'logging', 'monitoring']
210126-11:39:15,728 nipype.workflow INFO:
Running serially.
210126-11:39:15,728 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/tmp/fmridenoise/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/BidsGrabber".
210126-11:39:15,731 nipype.workflow INFO:
[Node] Cached "fmridenoise_wf.BidsGrabber" - collecting precomputed outputs
210126-11:39:15,731 nipype.workflow INFO:
[Node] "fmridenoise_wf.BidsGrabber" found cached.
210126-11:39:15,731 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/tmp/fmridenoise/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/Smoother".
210126-11:39:15,732 nipype.workflow INFO:
[Node] Cached "fmridenoise_wf.Smoother" - collecting precomputed outputs
210126-11:39:15,732 nipype.workflow INFO:
[Node] "fmridenoise_wf.Smoother" found cached.
210126-11:39:15,732 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/tmp/fmridenoise/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/BidsGrabber".
210126-11:39:15,734 nipype.workflow INFO:
[Node] Cached "fmridenoise_wf.BidsGrabber" - collecting precomputed outputs
210126-11:39:15,734 nipype.workflow INFO:
[Node] "fmridenoise_wf.BidsGrabber" found cached.
210126-11:39:15,735 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/tmp/fmridenoise/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/Smoother".
210126-11:39:15,739 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210126-11:42:24,890 nipype.workflow WARNING:
Storing result file without outputs
210126-11:42:24,892 nipype.workflow WARNING:
[Node] Error on "fmridenoise_wf.Smoother" (/tmp/fmridenoise/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/Smoother)
210126-11:42:24,895 nipype.workflow ERROR:
Node Smoother.a0.a0.a0.a0 failed to run on host vpspsy-t-srv01.psychology.su.se.
210126-11:42:24,895 nipype.workflow ERROR:
Saving crash info to /home/common/groups/fischer_lab/general_scripts/fmriprep/crash-20210126-114224-amiman-Smoother.a0.a0.a0.a0-bd37791f-900e-4df8-8557-cafd55e75356.pklz
Traceback (most recent call last):
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 46, in run
node.run(updatehash=updatehash)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
result = self._run_interface(execute=True)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
return self._run_command(execute)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
result = self._interface.run(cwd=outdir)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 419, in run
runtime = self._run_interface(runtime)
File "/home/amiman/.local/lib/python3.7/site-packages/fmridenoise-0.2.0-py3.7.egg/fmridenoise/interfaces/smoothing.py", line 42, in _run_interface
save(smoothed, output_path)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/loadsave.py", line 99, in save
img.to_filename(filename)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/filebasedimages.py", line 333, in to_filename
self.to_file_map()
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/analyze.py", line 1044, in to_file_map
arr_writer.to_fileobj(imgf)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/arraywriters.py", line 561, in to_fileobj
nan2zero=self._needs_nan2zero())
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/volumeutils.py", line 655, in array_to_file
pre_clips=pre_clips)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/volumeutils.py", line 827, in _write_data
fileobj.write(dslice.tobytes())
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nibabel/openers.py", line 165, in write
return self.fobj.write(*args, **kwargs)
File "/home/amiman/anaconda3/lib/python3.7/gzip.py", line 264, in write
self.fileobj.write(self.compress.compress(data))
OSError: [Errno 28] No space left on device

No space left on device means that there is problem with storage for cache.
Make sure that you have enough disk space to contain in between steps of processing - size it roughly equal to pipelines_used * original_dataset_size
Also you can change cache directory from /tmp to somewhere else with flag --workdir (usually there is hard limit on /tmp size that depends on OS)

manzouri · 2021-01-26T17:11:53Z

Thanks a lot. for the reply. I will try to change the´cache directory.

manzouri · 2021-01-27T11:31:08Z

Hi , would you please look at the error happened in the last step I assume:
210127-12:11:37,736 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.PipelinesQualityMeasures".
210127-12:11:37,736 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_tdof_loss" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_tdof_loss".
210127-12:11:37,745 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_tdof_loss" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,750 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_tdof_loss".
210127-12:11:37,750 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_distance_dependence_no_high".
210127-12:11:37,758 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_distance_dependence_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,762 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence_no_high".
210127-12:11:37,763 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_distance_dependence".
210127-12:11:37,770 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_distance_dependence" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,775 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence".
210127-12:11:37,775 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_uncorr" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_fc_fd_uncorr".
210127-12:11:37,783 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_fc_fd_uncorr" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,788 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_uncorr".
210127-12:11:37,788 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_fc_fd_no_high".
210127-12:11:37,796 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_fc_fd_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,801 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_no_high".
210127-12:11:37,801 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_fc_fd".
210127-12:11:37,810 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_fc_fd" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,815 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd".
210127-12:11:37,816 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_edges_density_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_edges_density_no_high".
210127-12:11:37,824 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_edges_density_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,828 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_edges_density_no_high".
210127-12:11:37,829 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_edges_density" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_edges_density".
210127-12:11:37,838 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_edges_density" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,844 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_edges_density".
210127-12:11:37,844 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_edges_weight_clean" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_edges_weight_clean".
210127-12:11:37,852 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_edges_weight_clean" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,857 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_edges_weight_clean".
210127-12:11:37,858 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_edges_weight" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_edges_weight".
210127-12:11:37,865 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_edges_weight" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,871 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_edges_weight".
210127-12:11:37,871 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_fc_fd_summery" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_fc_fd_summery".
210127-12:11:37,879 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_fc_fd_summery" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,883 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_fc_fd_summery".
210127-12:11:37,883 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.JoinQualityMeasuresOverPipeline" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/JoinQualityMeasuresOverPipeline".
210127-12:11:37,892 nipype.workflow INFO:
[Node] Running "JoinQualityMeasuresOverPipeline" ("fmridenoise.interfaces.utility.FlattenIdentityInterface")
210127-12:11:37,908 nipype.workflow WARNING:
Storing result file without outputs
210127-12:11:37,908 nipype.workflow WARNING:
[Node] Error on "fmridenoise_wf.JoinQualityMeasuresOverPipeline" (/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/JoinQualityMeasuresOverPipeline)
210127-12:11:37,938 nipype.workflow ERROR:
Node JoinQualityMeasuresOverPipeline.a0.a0.a0 failed to run on host vpspsy-t-srv01.psychology.su.se.
210127-12:11:37,938 nipype.workflow ERROR:
Saving crash info to /home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/crash-20210127-121137-amiman-JoinQualityMeasuresOverPipeline.a0.a0.a0-b397ae0a-98ff-45ac-bed3-a3694ae2d6d8.pklz
Traceback (most recent call last):
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 46, in run
node.run(updatehash=updatehash)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
result = self._run_interface(execute=True)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
return self._run_command(execute)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1004, in _run_command
return super(JoinNode, self)._run_command(execute, copyfiles)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
result = self._interface.run(cwd=outdir)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 421, in run
outputs = self.aggregate_outputs(runtime)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 498, in aggregate_outputs
predicted_outputs = self._list_outputs() # Predictions from _list_outputs
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/interfaces/utility.py", line 21, in _list_outputs
outputs[key] = list(chain(*outputs[key]))
TypeError: '_Undefined' object is not iterable

210127-12:11:37,949 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_quality_measures_corr_matrix_plot_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_quality_measures_corr_matrix_plot_no_high".
210127-12:11:37,957 nipype.workflow INFO:
[Node] Running "ds_quality_measures_corr_matrix_plot_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,963 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_quality_measures_corr_matrix_plot_no_high".
210127-12:11:37,963 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_quality_measures_corr_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_quality_measures_corr_matrix_plot".
210127-12:11:37,971 nipype.workflow INFO:
[Node] Running "ds_quality_measures_corr_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,977 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_quality_measures_corr_matrix_plot".
210127-12:11:37,977 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_quality_measures_motion_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_quality_measures_motion_plot".
210127-12:11:37,985 nipype.workflow INFO:
[Node] Running "ds_quality_measures_motion_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,993 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_quality_measures_motion_plot".
210127-12:11:37,994 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-12:11:37,996 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:38,1 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-12:11:38,1 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-12:11:38,4 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:38,9 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-12:11:38,9 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-12:11:38,12 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:38,17 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-12:11:38,17 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.JoinPipelines" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/JoinPipelines".
210127-12:11:38,21 nipype.workflow INFO:
[Node] Running "JoinPipelines" ("nipype.interfaces.utility.base.IdentityInterface")
210127-12:11:38,25 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.JoinPipelines".
210127-12:11:38,25 nipype.workflow INFO:
***********************************
210127-12:11:38,25 nipype.workflow ERROR:
could not run node: fmridenoise_wf.JoinQualityMeasuresOverPipeline.a0.a0.a0
210127-12:11:38,25 nipype.workflow INFO:
crashfile: /home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/crash-20210127-121137-amiman-JoinQualityMeasuresOverPipeline.a0.a0.a0-b397ae0a-98ff-45ac-bed3-a3694ae2d6d8.pklz
210127-12:11:38,25 nipype.workflow INFO:
***********************************
Traceback (most recent call last):
File "/home/amiman/anaconda3/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/home/amiman/anaconda3/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/main.py", line 238, in
main()
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/main.py", line 230, in main
compare(args)
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/main.py", line 207, in compare
workflow.run()
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/workflows.py", line 632, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 70, in run
report_nodes_not_run(notrun)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/tools.py", line 98, in report_nodes_not_run
("Workflow did not execute cleanly. " "Check log for details")
RuntimeError: Workflow did not execute cleanly. Check log for details

SiegfriedWagner · 2021-01-27T13:13:31Z

File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/interfaces/utility.py", line 21, in _list_outputs
outputs[key] = list(chain(*outputs[key]))
TypeError: '_Undefined' object is not iterable

This is the important part... It's bug in our code. I will try to debug this issue later - 2 weeks, because I have BSc to finish with very strict deadline.
Do you use datasets from some open database that I could use as a test sample?
Can you provide console command that you used to run analysis?
That's all for now from me.

manzouri · 2021-01-27T15:13:37Z

Hi and thanks, Unfortunately I can not share the data but let me know if you need any more information. Here is the command that I used and I just sent you the last part of output from terminal. I attach the full output with the command here again.
I have more question and really appreciate your answers:

If I can use the denoised outputs that has been created for my data
which are the steps recommended after denoising éxcept smoothing and if there is any recommended tool to do that?
I ran fmriprep using MNI152NLin2009cAsym template but I need my images in MNI symmetrical 3mm , so I think I need to register my denoised images to MNI 3mm right? do you know the best way to do this?
Thanks in advance
fmridenoise compare /home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/ --pipelines pipeline-24HMP_8Phys_SpikeReg --workdir /home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/
/home/amiman/anaconda3/lib/python3.7/site-packages/sklearn/feature_extraction/text.py:17: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working
from collections import Mapping, defaultdict
210127-08:33:26,504 nipype.workflow INFO:
[Node] Setting-up "BidsValidate" in "/tmp/tmpuyug872q/BidsValidate".
210127-08:33:26,545 nipype.workflow INFO:
[Node] Running "BidsValidate" ("fmridenoise.interfaces.bids.BIDSValidate")
/home/amiman/anaconda3/lib/python3.7/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the config_filename, ignore, force_index, and index_metadata arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments, and pass it to the BIDSLayout via the indexer argument.
warnings.warn("The ability to pass arguments to BIDSLayout that control "
/home/amiman/anaconda3/lib/python3.7/site-packages/bids/layout/validation.py:46: UserWarning: The ability to pass arguments to BIDSLayout that control indexing is likely to be removed in future; possibly as early as PyBIDS 0.14. This includes the config_filename, ignore, force_index, and index_metadata arguments. The recommended usage pattern is to initialize a new BIDSLayoutIndexer with these arguments, and pass it to the BIDSLayout via the indexer argument.
warnings.warn("The ability to pass arguments to BIDSLayout that control "
210127-08:35:04,600 nipype.workflow INFO:
[Node] Finished "BidsValidate".
210127-08:35:05,162 nipype.workflow INFO:
Workflow fmridenoise_wf settings: ['check', 'execution', 'logging', 'monitoring']
210127-08:35:05,507 nipype.workflow INFO:
Running serially.
210127-08:35:05,509 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/BidsGrabber".
210127-08:35:05,518 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:35:05,521 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:35:05,521 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/Smoother".
210127-08:35:05,524 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:38:23,239 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:38:23,239 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/BidsGrabber".
210127-08:38:23,247 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:38:23,250 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:38:23,250 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/Smoother".
210127-08:38:23,253 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:41:39,567 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:41:39,568 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/BidsGrabber".
210127-08:41:39,576 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:41:39,579 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:41:39,579 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/Smoother".
210127-08:41:39,582 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:44:54,437 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:44:54,438 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/BidsGrabber".
210127-08:44:54,445 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:44:54,449 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:44:54,449 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/Smoother".
210127-08:44:54,452 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:48:04,30 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:48:04,30 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/BidsGrabber".
210127-08:48:04,38 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:48:04,41 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:48:04,41 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/Smoother".
210127-08:48:04,44 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:51:15,900 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:51:15,900 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/BidsGrabber".
210127-08:51:15,908 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:51:15,911 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:51:15,912 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/Smoother".
210127-08:51:15,914 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:54:27,839 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:54:27,839 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/BidsGrabber".
210127-08:54:27,847 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:54:27,850 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:54:27,850 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/Smoother".
210127-08:54:27,853 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-08:57:41,279 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-08:57:41,279 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/BidsGrabber".
210127-08:57:41,287 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-08:57:41,292 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-08:57:41,292 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/Smoother".
210127-08:57:41,295 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:00:52,101 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:00:52,101 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/BidsGrabber".
210127-09:00:52,109 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:00:52,112 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:00:52,112 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/Smoother".
210127-09:00:52,115 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:04:08,827 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:04:08,827 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/BidsGrabber".
210127-09:04:08,835 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:04:08,838 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:04:08,838 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/Smoother".
210127-09:04:08,841 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:07:23,882 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:07:23,882 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/BidsGrabber".
210127-09:07:23,890 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:07:23,893 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:07:23,893 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/Smoother".
210127-09:07:23,896 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:10:34,729 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:10:34,730 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/BidsGrabber".
210127-09:10:34,738 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:10:34,741 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:10:34,741 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/Smoother".
210127-09:10:34,745 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:13:43,871 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:13:43,871 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/BidsGrabber".
210127-09:13:43,879 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:13:43,882 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:13:43,883 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/Smoother".
210127-09:13:43,886 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:17:01,12 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:17:01,12 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/BidsGrabber".
210127-09:17:01,20 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:17:01,23 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:17:01,23 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/Smoother".
210127-09:17:01,26 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:20:15,942 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:20:15,942 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/BidsGrabber".
210127-09:20:15,950 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:20:15,954 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:20:15,954 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/Smoother".
210127-09:20:15,957 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:23:21,964 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:23:21,964 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/BidsGrabber".
210127-09:23:21,972 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:23:21,976 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:23:21,976 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/Smoother".
210127-09:23:21,979 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:26:36,610 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:26:36,610 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/BidsGrabber".
210127-09:26:36,618 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:26:36,622 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:26:36,622 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/Smoother".
210127-09:26:36,625 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:29:46,387 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:29:46,387 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/BidsGrabber".
210127-09:29:46,395 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:29:46,398 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:29:46,398 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/Smoother".
210127-09:29:46,403 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:32:59,521 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:32:59,521 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/BidsGrabber".
210127-09:32:59,529 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:32:59,532 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:32:59,532 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/Smoother".
210127-09:32:59,535 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:36:07,850 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:36:07,850 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/BidsGrabber".
210127-09:36:07,859 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:36:07,862 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:36:07,862 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/Smoother".
210127-09:36:07,865 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:39:26,157 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:39:26,158 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/BidsGrabber".
210127-09:39:26,165 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:39:26,168 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:39:26,169 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/Smoother".
210127-09:39:26,171 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:42:43,455 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:42:43,455 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/BidsGrabber".
210127-09:42:43,467 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:42:43,473 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:42:43,474 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/Smoother".
210127-09:42:43,477 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:46:04,238 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:46:04,239 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/BidsGrabber".
210127-09:46:04,249 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:46:04,252 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:46:04,252 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/Smoother".
210127-09:46:04,255 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:49:19,886 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:49:19,886 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.BidsGrabber" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/BidsGrabber".
210127-09:49:19,894 nipype.workflow INFO:
[Node] Running "BidsGrabber" ("fmridenoise.interfaces.bids.BIDSGrab")
210127-09:49:19,898 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.BidsGrabber".
210127-09:49:19,898 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Smoother" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/Smoother".
210127-09:49:19,901 nipype.workflow INFO:
[Node] Running "Smoother" ("fmridenoise.interfaces.smoothing.Smooth")
210127-09:52:31,122 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Smoother".
210127-09:52:31,123 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.PipelineSelector" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/PipelineSelector".
210127-09:52:31,125 nipype.workflow INFO:
[Node] Running "PipelineSelector" ("fmridenoise.interfaces.pipeline_selector.PipelineSelector")
210127-09:52:31,128 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.PipelineSelector".
210127-09:52:31,128 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-09:52:31,133 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-09:52:31,841 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-09:52:31,841 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-09:52:31,844 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-09:52:31,850 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-09:52:31,850 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-09:52:31,873 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-09:57:52,610 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-09:57:52,610 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-09:57:52,613 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-09:57:57,892 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-09:57:57,893 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-09:57:57,895 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-09:58:23,700 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-09:58:23,700 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-09:58:23,703 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-09:58:23,709 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-09:58:23,709 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-09:58:23,711 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-09:58:23,717 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-09:58:23,717 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5661583/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-09:58:23,720 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-09:58:23,725 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-09:58:23,725 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-09:58:23,731 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-09:58:23,868 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-09:58:23,868 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-09:58:23,871 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-09:58:23,877 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-09:58:23,877 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-09:58:23,883 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:03:43,928 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:03:43,928 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:03:43,931 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:03:49,53 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:03:49,54 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:03:49,56 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:04:19,763 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:04:19,764 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:04:19,768 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:04:19,774 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:04:19,774 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:04:19,777 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:04:19,784 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:04:19,784 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651456/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:04:19,787 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:04:19,792 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:04:19,793 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:04:19,799 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:04:19,960 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:04:19,960 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:04:19,963 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:04:19,972 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:04:19,972 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:04:19,978 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:09:41,117 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:09:41,118 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:09:41,121 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:09:46,343 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:09:46,343 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:09:46,346 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:10:12,952 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:10:12,952 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:10:12,955 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:10:12,960 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:10:12,961 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:10:12,963 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:10:12,968 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:10:12,969 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5651255/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:10:12,971 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:10:12,976 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:10:12,976 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:10:12,982 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:10:13,208 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:10:13,208 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:10:13,211 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:10:13,217 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:10:13,218 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:10:13,224 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:15:27,856 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:15:27,856 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:15:27,859 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:15:32,768 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:15:32,769 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:15:32,771 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:15:59,538 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:15:59,538 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:15:59,541 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:15:59,547 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:15:59,547 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:15:59,550 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:15:59,555 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:15:59,555 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5648974/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:15:59,558 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:15:59,563 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:15:59,563 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:15:59,571 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:15:59,705 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:15:59,706 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:15:59,708 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:15:59,714 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:15:59,715 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:15:59,720 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:21:17,726 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:21:17,727 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:21:17,730 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:21:22,651 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:21:22,652 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:21:22,655 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:21:47,783 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:21:47,783 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:21:47,786 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:21:47,793 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:21:47,793 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:21:47,796 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:21:47,800 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:21:47,801 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5646971/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:21:47,803 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:21:47,808 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:21:47,808 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:21:47,854 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:21:47,997 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:21:47,997 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:21:47,999 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:21:48,5 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:21:48,5 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:21:48,11 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:27:02,864 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:27:02,865 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:27:02,868 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:27:07,942 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:27:07,942 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:27:07,945 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:27:35,38 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:27:35,39 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:27:35,42 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:27:35,50 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:27:35,50 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:27:35,54 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:27:35,62 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:27:35,62 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5645911/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:27:35,66 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:27:35,85 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:27:35,86 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:27:35,126 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:27:35,302 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:27:35,302 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:27:35,306 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:27:35,317 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:27:35,318 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:27:35,328 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:33:04,301 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:33:04,302 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:33:04,305 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:33:09,420 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:33:09,420 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:33:09,423 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:33:35,386 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:33:35,386 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:33:35,389 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:33:35,395 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:33:35,395 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:33:35,397 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:33:35,403 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:33:35,403 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5644793/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:33:35,405 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:33:35,410 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:33:35,411 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:33:35,426 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:33:35,574 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:33:35,574 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:33:35,577 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:33:35,584 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:33:35,584 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:33:35,590 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:39:12,703 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:39:12,703 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:39:12,706 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:39:17,666 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:39:17,666 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:39:17,669 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:39:42,650 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:39:42,650 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:39:42,654 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:39:42,660 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:39:42,661 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:39:42,664 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:39:42,669 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:39:42,670 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642345/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:39:42,672 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:39:42,678 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:39:42,678 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:39:42,699 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:39:42,878 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:39:42,878 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:39:42,880 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:39:42,886 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:39:42,886 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:39:42,893 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:44:59,545 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:44:59,545 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:44:59,548 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:45:04,765 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:45:04,765 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:45:04,768 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:45:30,435 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:45:30,435 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:45:30,439 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:45:30,445 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:45:30,445 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:45:30,449 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:45:30,454 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:45:30,455 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5642049/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:45:30,458 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:45:30,463 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:45:30,464 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:45:30,485 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:45:31,381 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:45:31,382 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:45:31,385 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:45:31,392 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:45:31,393 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:45:31,401 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:50:48,539 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:50:48,539 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:50:48,543 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:50:53,618 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:50:53,619 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:50:53,624 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
210127-10:51:19,71 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:51:19,72 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:51:19,74 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:51:19,80 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:51:19,81 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:51:19,83 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:51:19,88 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:51:19,88 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5639748/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:51:19,91 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:51:19,96 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:51:19,96 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:51:19,108 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:51:19,238 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:51:19,239 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:51:19,241 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:51:19,247 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:51:19,247 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:51:19,254 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-10:56:35,796 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-10:56:35,796 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-10:56:35,800 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:56:40,759 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-10:56:40,760 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-10:56:40,762 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-10:57:05,674 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-10:57:05,674 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-10:57:05,677 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:57:05,682 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-10:57:05,683 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-10:57:05,685 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:57:05,690 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-10:57:05,690 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637639/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-10:57:05,693 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:57:05,697 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-10:57:05,697 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-10:57:05,711 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-10:57:05,862 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-10:57:05,862 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-10:57:05,865 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-10:57:05,871 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-10:57:05,871 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-10:57:05,877 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:02:15,638 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:02:15,638 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:02:15,641 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:02:20,479 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:02:20,479 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:02:20,482 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:02:46,76 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:02:46,76 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:02:46,79 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:02:46,84 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:02:46,84 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:02:46,87 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:02:46,92 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:02:46,92 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5637396/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:02:46,94 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:02:46,99 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:02:46,99 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:02:46,139 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:02:46,292 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:02:46,292 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:02:46,295 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:02:46,301 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:02:46,301 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:02:46,307 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:08:07,840 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:08:07,841 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:08:07,844 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:08:13,9 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:08:13,10 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:08:13,13 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:08:38,470 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:08:38,470 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:08:38,473 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:08:38,479 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:08:38,479 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:08:38,482 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:08:38,487 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:08:38,487 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5634307/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:08:38,490 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:08:38,495 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:08:38,495 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:08:38,529 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:08:38,661 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:08:38,661 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:08:38,664 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:08:38,669 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:08:38,670 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:08:38,676 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:13:56,695 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:13:56,695 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:13:56,699 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:14:01,899 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:14:01,899 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:14:01,902 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:14:27,432 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:14:27,432 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:14:27,436 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:14:27,441 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:14:27,441 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:14:27,444 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:14:27,449 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:14:27,449 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5626283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:14:27,452 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:14:27,457 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:14:27,457 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:14:27,516 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:14:27,722 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:14:27,722 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:14:27,725 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:14:27,730 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:14:27,731 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:14:27,738 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:19:33,321 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:19:33,322 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:19:33,328 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:19:38,83 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:19:38,83 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:19:38,86 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:20:02,814 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:20:02,815 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:20:02,817 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:20:02,823 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:20:02,823 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:20:02,826 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:20:02,831 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:20:02,831 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5620096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:20:02,833 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:20:02,838 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:20:02,838 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:20:02,862 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:20:03,31 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:20:03,31 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:20:03,33 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:20:03,39 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:20:03,39 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:20:03,46 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:25:22,943 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:25:22,943 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:25:22,946 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:25:27,904 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:25:27,905 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:25:27,907 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:25:53,101 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:25:53,101 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:25:53,104 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:25:53,110 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:25:53,110 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:25:53,112 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:25:53,117 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:25:53,118 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5615377/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:25:53,120 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:25:53,125 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:25:53,125 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:25:53,135 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:25:53,290 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:25:53,291 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:25:53,293 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:25:53,299 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:25:53,299 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:25:53,306 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:30:59,211 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:30:59,211 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:30:59,240 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:31:04,106 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:31:04,106 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:31:04,109 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:31:28,885 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:31:28,885 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:31:28,888 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:31:28,894 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:31:28,894 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:31:28,896 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:31:28,902 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:31:28,902 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5610321/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:31:28,904 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:31:28,909 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:31:28,910 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:31:28,925 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:31:29,82 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:31:29,82 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:31:29,85 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:31:29,91 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:31:29,91 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:31:29,97 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:36:42,485 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:36:42,485 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:36:42,488 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:36:47,510 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:36:47,510 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:36:47,513 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:37:12,765 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:37:12,765 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:37:12,768 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:37:12,775 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:37:12,775 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:37:12,777 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:37:12,782 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:37:12,783 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5608481/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:37:12,785 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:37:12,790 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:37:12,790 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:37:12,825 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:37:12,985 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:37:12,985 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:37:12,988 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:37:12,994 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:37:12,994 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:37:13,0 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:42:20,207 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:42:20,208 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:42:20,210 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:42:25,208 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:42:25,208 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:42:25,211 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:42:50,252 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:42:50,252 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:42:50,255 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:42:50,261 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:42:50,261 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:42:50,263 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:42:50,268 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:42:50,268 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607742/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:42:50,271 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:42:50,276 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:42:50,276 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:42:50,323 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:42:50,458 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:42:50,459 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:42:50,461 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:42:50,467 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:42:50,467 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:42:50,474 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:48:06,735 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:48:06,735 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:48:06,739 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:48:11,907 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:48:11,907 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:48:11,911 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:48:37,540 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:48:37,540 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:48:37,543 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:48:37,548 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:48:37,549 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:48:37,551 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:48:37,556 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:48:37,556 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5607499/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:48:37,559 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:48:37,564 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:48:37,564 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:48:37,607 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:48:37,797 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:48:37,797 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:48:37,800 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:48:37,806 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:48:37,806 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:48:37,812 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:53:54,440 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:53:54,441 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:53:54,444 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:53:59,677 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:53:59,677 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:53:59,680 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-11:54:25,917 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-11:54:25,917 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-11:54:25,923 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:54:25,930 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-11:54:25,930 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-11:54:25,935 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:54:25,943 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-11:54:25,943 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5605954/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-11:54:25,946 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:54:25,951 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-11:54:25,951 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-11:54:25,991 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-11:54:26,171 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-11:54:26,171 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-11:54:26,174 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:54:26,180 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-11:54:26,180 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-11:54:26,187 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-11:59:38,813 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-11:59:38,813 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-11:59:38,817 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-11:59:43,891 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-11:59:43,892 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-11:59:43,894 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-12:00:09,782 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-12:00:09,783 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-12:00:09,785 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:00:09,791 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-12:00:09,791 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-12:00:09,794 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:00:09,799 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-12:00:09,799 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600357/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-12:00:09,801 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:00:09,806 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-12:00:09,807 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-12:00:09,845 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-12:00:09,977 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-12:00:09,977 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-12:00:09,982 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:00:09,988 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-12:00:09,988 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-12:00:09,995 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-12:05:22,468 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-12:05:22,468 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-12:05:22,472 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:05:27,573 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-12:05:27,574 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-12:05:27,577 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-12:05:52,724 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-12:05:52,724 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-12:05:52,728 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:05:52,733 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-12:05:52,733 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-12:05:52,736 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:05:52,741 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-12:05:52,742 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5600283/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-12:05:52,745 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:05:52,750 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-12:05:52,750 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConfPrep" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConfPrep".
210127-12:05:52,794 nipype.workflow INFO:
[Node] Running "ConfPrep" ("fmridenoise.interfaces.confounds.Confounds")
210127-12:05:52,963 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConfPrep".
210127-12:05:52,963 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.GroupConf" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/GroupConf".
210127-12:05:53,57 nipype.workflow INFO:
[Node] Running "GroupConf" ("fmridenoise.interfaces.confounds.GroupConfounds")
210127-12:05:53,175 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.GroupConf".
210127-12:05:53,175 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_group_conf_summary" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_group_conf_summary".
210127-12:05:53,178 nipype.workflow INFO:
[Node] Running "ds_group_conf_summary" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:05:53,185 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_group_conf_summary".
210127-12:05:53,185 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_confounds" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_confounds".
210127-12:05:53,188 nipype.workflow INFO:
[Node] Running "ds_confounds" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:05:53,194 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_confounds".
210127-12:05:53,194 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.Denoiser" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/Denoiser".
210127-12:05:53,201 nipype.workflow INFO:
[Node] Running "Denoiser" ("fmridenoise.interfaces.denoising.Denoise")
210127-12:11:01,143 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.Denoiser".
210127-12:11:01,143 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_denoise" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_denoise".
210127-12:11:01,147 nipype.workflow INFO:
[Node] Running "ds_denoise" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:06,12 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_denoise".
210127-12:11:06,12 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ConnCalc" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ConnCalc".
210127-12:11:06,15 nipype.workflow INFO:
[Node] Running "ConnCalc" ("fmridenoise.interfaces.connectivity.Connectivity")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:299: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig = plt.figure(figsize=figsize, dpi=dpi)
/home/amiman/anaconda3/lib/python3.7/site-packages/nilearn/plotting/matrix_plotting.py:146: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, 1, figsize=(7, 5))
210127-12:11:30,904 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ConnCalc".
210127-12:11:30,905 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.GroupConn" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/GroupConn".
210127-12:11:30,952 nipype.workflow INFO:
[Node] Running "GroupConn" ("fmridenoise.interfaces.connectivity.GroupConnectivity")
210127-12:11:31,18 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.GroupConn".
210127-12:11:31,18 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_group_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_group_connectivity".
210127-12:11:31,21 nipype.workflow INFO:
[Node] Running "ds_group_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:31,43 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_group_connectivity".
210127-12:11:31,44 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.QualityMeasures" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/QualityMeasures".
210127-12:11:31,53 nipype.workflow INFO:
[Node] Running "QualityMeasures" ("fmridenoise.interfaces.quality_measures.QualityMeasures")
/home/amiman/anaconda3/lib/python3.7/site-packages/scipy/stats/stats.py:3845: PearsonRConstantInputWarning: An input array is constant; the correlation coefficent is not defined.
warnings.warn(PearsonRConstantInputWarning())
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/interfaces/quality_measures.py:196: UserWarning: NaN values in correlation measues; replaced with zeros.
warnings.warn('NaN values in correlation measues; ' +
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/interfaces/quality_measures.py:170: RuntimeWarning: invalid value encountered in less
return np.sum(fc_fd_pval < cls.pval_tresh) / len(fc_fd_pval) * 100
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/interfaces/quality_measures.py:196: UserWarning: NaN values in correlation measues; replaced with zeros.
warnings.warn('NaN values in correlation measues; ' +
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:68: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(1, len(columns), figsize=(16, 7))
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:262: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, ax = plt.subplots(1, 1)
210127-12:11:34,883 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.QualityMeasures".
210127-12:11:34,884 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.PipelinesQualityMeasures" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/PipelinesQualityMeasures".
210127-12:11:35,373 nipype.workflow INFO:
[Node] Running "PipelinesQualityMeasures" ("fmridenoise.interfaces.quality_measures.PipelinesQualityMeasures")
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:129: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, ax = plt.subplots(1, 1)
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:129: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, ax = plt.subplots(1, 1)
/home/amiman/anaconda3/lib/python3.7/site-packages/seaborn/axisgrid.py:392: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(nrow, ncol, **kwargs)
/home/amiman/anaconda3/lib/python3.7/site-packages/seaborn/axisgrid.py:392: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(nrow, ncol, **kwargs)
/home/amiman/anaconda3/lib/python3.7/site-packages/seaborn/axisgrid.py:392: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(nrow, ncol, **kwargs)
/home/amiman/anaconda3/lib/python3.7/site-packages/seaborn/axisgrid.py:392: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(nrow, ncol, **kwargs)
/home/amiman/anaconda3/lib/python3.7/site-packages/seaborn/axisgrid.py:392: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(nrow, ncol, **kwargs)
/home/amiman/anaconda3/lib/python3.7/site-packages/seaborn/axisgrid.py:392: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, axes = plt.subplots(nrow, ncol, **kwargs)
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:206: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, ax = plt.subplots(1, 1)
/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/utils/plotting.py:206: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (matplotlib.pyplot.figure) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam figure.max_open_warning).
fig, ax = plt.subplots(1, 1)
210127-12:11:37,736 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.PipelinesQualityMeasures".
210127-12:11:37,736 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_tdof_loss" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_tdof_loss".
210127-12:11:37,745 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_tdof_loss" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,750 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_tdof_loss".
210127-12:11:37,750 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_distance_dependence_no_high".
210127-12:11:37,758 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_distance_dependence_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,762 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence_no_high".
210127-12:11:37,763 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_distance_dependence".
210127-12:11:37,770 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_distance_dependence" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,775 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_distance_dependence".
210127-12:11:37,775 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_uncorr" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_fc_fd_uncorr".
210127-12:11:37,783 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_fc_fd_uncorr" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,788 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_uncorr".
210127-12:11:37,788 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_fc_fd_no_high".
210127-12:11:37,796 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_fc_fd_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,801 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd_no_high".
210127-12:11:37,801 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_fc_fd".
210127-12:11:37,810 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_fc_fd" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,815 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_fc_fd".
210127-12:11:37,816 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_edges_density_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_edges_density_no_high".
210127-12:11:37,824 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_edges_density_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,828 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_edges_density_no_high".
210127-12:11:37,829 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_plot_edges_density" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_plot_edges_density".
210127-12:11:37,838 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_plot_edges_density" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,844 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_plot_edges_density".
210127-12:11:37,844 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_edges_weight_clean" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_edges_weight_clean".
210127-12:11:37,852 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_edges_weight_clean" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,857 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_edges_weight_clean".
210127-12:11:37,858 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_edges_weight" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_edges_weight".
210127-12:11:37,865 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_edges_weight" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,871 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_edges_weight".
210127-12:11:37,871 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_pipeline_qm_fc_fd_summery" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/ds_pipeline_qm_fc_fd_summery".
210127-12:11:37,879 nipype.workflow INFO:
[Node] Running "ds_pipeline_qm_fc_fd_summery" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,883 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_pipeline_qm_fc_fd_summery".
210127-12:11:37,883 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.JoinQualityMeasuresOverPipeline" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/JoinQualityMeasuresOverPipeline".
210127-12:11:37,892 nipype.workflow INFO:
[Node] Running "JoinQualityMeasuresOverPipeline" ("fmridenoise.interfaces.utility.FlattenIdentityInterface")
210127-12:11:37,908 nipype.workflow WARNING:
Storing result file without outputs
210127-12:11:37,908 nipype.workflow WARNING:
[Node] Error on "fmridenoise_wf.JoinQualityMeasuresOverPipeline" (/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/JoinQualityMeasuresOverPipeline)
210127-12:11:37,938 nipype.workflow ERROR:
Node JoinQualityMeasuresOverPipeline.a0.a0.a0 failed to run on host vpspsy-t-srv01.psychology.su.se.
210127-12:11:37,938 nipype.workflow ERROR:
Saving crash info to /home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/crash-20210127-121137-amiman-JoinQualityMeasuresOverPipeline.a0.a0.a0-b397ae0a-98ff-45ac-bed3-a3694ae2d6d8.pklz
Traceback (most recent call last):
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 46, in run
node.run(updatehash=updatehash)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 516, in run
result = self._run_interface(execute=True)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 635, in _run_interface
return self._run_command(execute)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 1004, in _run_command
return super(JoinNode, self)._run_command(execute, copyfiles)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/nodes.py", line 741, in _run_command
result = self._interface.run(cwd=outdir)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 421, in run
outputs = self.aggregate_outputs(runtime)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 498, in aggregate_outputs
predicted_outputs = self._list_outputs() # Predictions from _list_outputs
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/interfaces/utility.py", line 21, in _list_outputs
outputs[key] = list(chain(*outputs[key]))
TypeError: '_Undefined' object is not iterable

210127-12:11:37,949 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_quality_measures_corr_matrix_plot_no_high" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_quality_measures_corr_matrix_plot_no_high".
210127-12:11:37,957 nipype.workflow INFO:
[Node] Running "ds_quality_measures_corr_matrix_plot_no_high" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,963 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_quality_measures_corr_matrix_plot_no_high".
210127-12:11:37,963 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_quality_measures_corr_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_quality_measures_corr_matrix_plot".
210127-12:11:37,971 nipype.workflow INFO:
[Node] Running "ds_quality_measures_corr_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,977 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_quality_measures_corr_matrix_plot".
210127-12:11:37,977 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_quality_measures_motion_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_quality_measures_motion_plot".
210127-12:11:37,985 nipype.workflow INFO:
[Node] Running "ds_quality_measures_motion_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:37,993 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_quality_measures_motion_plot".
210127-12:11:37,994 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_carpet_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_carpet_plot".
210127-12:11:37,996 nipype.workflow INFO:
[Node] Running "ds_carpet_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:38,1 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_carpet_plot".
210127-12:11:38,1 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_matrix_plot" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_matrix_plot".
210127-12:11:38,4 nipype.workflow INFO:
[Node] Running "ds_matrix_plot" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:38,9 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_matrix_plot".
210127-12:11:38,9 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.ds_connectivity" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/_run_1/_session_01/_subject_5599096/_task_faceloc/pipeline_path..home..common..groups..fischer_lab..general_scripts..fmriprep..fmridenoise-master..fmridenoise..pipelines..pipeline-24HMP_8Phys_SpikeReg.json/ds_connectivity".
210127-12:11:38,12 nipype.workflow INFO:
[Node] Running "ds_connectivity" ("fmridenoise.interfaces.bids.BIDSDataSink")
210127-12:11:38,17 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.ds_connectivity".
210127-12:11:38,17 nipype.workflow INFO:
[Node] Setting-up "fmridenoise_wf.JoinPipelines" in "/home/common/groups/fischer_lab/study/TREVAR/raw_data/OUT/derivatives/workdir/fmridenoise_wf/JoinPipelines".
210127-12:11:38,21 nipype.workflow INFO:
[Node] Running "JoinPipelines" ("nipype.interfaces.utility.base.IdentityInterface")
210127-12:11:38,25 nipype.workflow INFO:
[Node] Finished "fmridenoise_wf.JoinPipelines".
210127-12:11:38,25 nipype.workflow INFO:
***********************************
210127-12:11:38,25 nipype.workflow ERROR:
could not run node: fmridenoise_wf.JoinQualityMeasuresOverPipeline.a0.a0.a0
210127-12:11:38,25 nipype.workflow INFO:
crashfile: /home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/crash-20210127-121137-amiman-JoinQualityMeasuresOverPipeline.a0.a0.a0-b397ae0a-98ff-45ac-bed3-a3694ae2d6d8.pklz
210127-12:11:38,25 nipype.workflow INFO:
***********************************
Traceback (most recent call last):
File "/home/amiman/anaconda3/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/home/amiman/anaconda3/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/main.py", line 238, in
main()
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/main.py", line 230, in main
compare(args)
File "/home/common/groups/fischer_lab/general_scripts/fmriprep/fmridenoise-master/fmridenoise/main.py", line 207, in compare
workflow.run()
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/engine/workflows.py", line 632, in run
runner.run(execgraph, updatehash=updatehash, config=self.config)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/linear.py", line 70, in run
report_nodes_not_run(notrun)
File "/home/amiman/anaconda3/lib/python3.7/site-packages/nipype/pipeline/plugins/tools.py", line 98, in report_nodes_not_run
("Workflow did not execute cleanly. " "Check log for details")
RuntimeError: Workflow did not execute cleanly. Check log for details

manzouri · 2021-02-22T14:17:15Z

Hi, Could you find some time to debug the error? I actually noted that after I got this error , I got the demonised files which when I open them doesn't look as brain but also smoothed output which looks ok!

SiegfriedWagner added the bug Something isn't working label Jan 27, 2021

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Problem running fmridenoise #88

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manzouri commented Feb 22, 2021

Problem running fmridenoise #88

Problem running fmridenoise #88

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manzouri commented Jan 22, 2021

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