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<h1 class="page-header">CSBIO Research</h1>
</div>
</div>
<hr class="large-break">
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<div class="row">
<div class="col-12">
<table id="example" class="display" cellspacing="0" width="100%">
<thead>
<tr>
<td>
Author/Title
<br>
<small>* denotes equal author contribution</small>
<br>
<small>^ denotes equal corresponding author contribution</small></td>
<td>
Journal</td>
<td>
Date</td>
<td>
Type</td>
</tr>
</thead>
<tbody>
<tr>
<td>
Leeuwen J, Pons C, Tan G, Wang JZ, Hou J, Weile J, Gebbia M, Liang W, Shuteriqi E, Li Z, Lopes M, Ušaj M, Lopes ADS, Lieshout N, Myers CL, Roth FP, Aloy F, Andrews BJ^, Boone C^
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.embopress.org/doi/full/10.15252/msb.20209828> Systematic analysis of bypass suppression of essential genes</a> </li> </ul> </td> <td>Mol Syst Biol
</td>
<td>9/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Kuzmin E*, VanderSluis B*, Ba ANN, Wang W, Koch EN, Usaj M, Khmelinskii A, Usaj MM, Leeuwen J, Kraus O, Tresenrider A, Pryszlak M, Hu M-C, Varriano B, Costanzo M, Knop M, Moses A, Myers CL^, Andrews BJ^, Boone C^
<br>
<ul class="list-unstyled">
<li>
<a href=https://science.sciencemag.org/content/368/6498/eaaz5667.abstract> Exploring whole-genome duplicate gene retention with complex genetic interaction analysis</a> </li> </ul> </td> <td>Science
</td>
<td>6/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Aregger M, Lawson KA, Billmann M, Costanzo M, Tong AHY, Chan K, Rahman M, Brown KR, Ross C, Usaj M, Nedyalkova L, Sizova O, Habsid A, Pawling J, Lin ZY, Abdouni H, Wong CJ, Weiss A, Mero P,
Dennis JW, Gingras A-C, Myers CL^, Andrews BJ^, Boone C^, Moffat J^
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.nature.com/articles/s42255-020-0211-z> Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism</a> </li> </ul> </td> <td>Nat Metab
</td>
<td>6/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Eisenstatt JR, Boeckmann L, Au W-C, Garcia V, Bursch L, Ocampo J, Costanzo M, Weinreich M, Sclafani RA, Baryshnikova A, Myers CL, Boone C, Clark DJ, Baker R, Basrai MA
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.g3journal.org/content/10/6/2057.abstract> Dbf4-dependent kinase (DDK)-mediated proteolysis of CENP-A prevents mislocalization of CENP-A in Saccharomyces cerevisiae</a> </li> </ul> </td> <td>G3
</td>
<td>6/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Stroik S, Kurtz K, Lin K, Karachenets S, Myers CL, Bielinsky A-J, Hendrickson EA
<br>
<ul class="list-unstyled">
<li>
<a href=https://academic.oup.com/nar/article/48/9/4960/5814055> EXO1 resection at G-quadruplex structures facilitates resolution and replication</a> </li> </ul> </td> <td>Nucleic Acids Res
</td>
<td>5/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Michno J-M, Liu J, Jeffers JR, Stupar RM, Myers CL
<br>
<ul class="list-unstyled">
<li>
<a href=https://onlinelibrary.wiley.com/doi/full/10.1002/pld3.220> Identification of nodulation‐related genes in Medicago truncatula using genome‐wide association studies and co‐expression networks</a> </li> </ul> </td> <td>Plant Direct
</td>
<td>5/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Thomas G-P, Aregger M, Brown KR, Farhangmehr S, Braunschweig U, Ward HN, Ha KCH, Weiss A, Billmann M, Durbic T, Myers CL, Blencowe BJ^, Moffat J^
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.nature.com/articles/s41587-020-0437-z> Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9–Cas12a platform</a> </li> </ul> </td> <td>Nat Biotechnol
</td>
<td>5/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Au W-C, Zhang T, Mishra PK, Eisenstatt JR, Walker RL, Ocampo J, Dawson A, Warren J, Costanzo M, Baryshnikova A, Flick K, Clark DJ, Meltzer PS, Baker RE, Myers CL, Boone C, Kaiser P, Basrai MA
<br>
<ul class="list-unstyled">
<li>
<a href=https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1008597> Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated proteolysis
of CENP-A prevents mislocalization of CENP-A for chromosomal stability in budding yeast</a> </li> </ul> </td> <td>PLoS Genet
</td>
<td>2/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Sachs K, Sarver AL, Noble-Orcutt KE, LaRue RS, Antony ML, Chang D, Lee Y, Navis CM, Hillesheim AL, Nykaza IR, Ha NA, Hansen CJ, Karadag FK,
Bergerson RJ, Verneris MR, Meredith MM, Schomaker ML, Linden MA, Myers CL, Largaespada DA, Sachs Z
<br>
<ul class="list-unstyled">
<li>
<a href=https://cancerres.aacrjournals.org/content/80/3/458> Single-cell gene expression analyses reveal distinct
self-renewing and proliferating subsets in the leukemia stem cell compartment in acute myeloid leukemia</a> </li> </ul> </td> <td>Cancer Research
</td>
<td>1/2020</td>
<td>Article</td>
</tr>
<tr>
<td>
Chen D, Xu W, Wang Y, Ye Y, Wang Y, Yu M, Gao J, Wei J, Dong Y, Zhang H, Fu X, Ma K, Wang H,
Yang Z, Zhou J, Cheng W, Wang S, Chen J, Grant BD, Myers CL, Shi A^, Xia T^
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.sciencedirect.com/science/article/pii/S2211124719313981> Revealing functional crosstalk between
distinct bioprocesses through reciprocal functional Tests of genetically interacting genes</a> </li> </ul> </td> <td>Cell Reports
</td>
<td>11/2019</td>
<td>Article</td>
</tr>
<tr>
<td>
Fang G, Wang W, Paunic V, Heydari H, Costanzo M, Lie X, Liu X, VanderSluis B,
Oately B, Steinbach M, Van Ness B, Schadt EE, Pankratz D, Boone C, Kumar V^,
Myers CL^
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.nature.com/articles/s41467-019-12131-7> Discovering genetic interactions
bridging pathways in genome-wide association studies</a> </li> </ul> </td> <td>Nature Comm
</td>
<td>9/2019</td>
<td>Article</td>
</tr>
<tr>
<td>
Zhou F, Li SC, Zhu Y, Guo W, Shao L, Nelson J, Simpkins SW, Yang D, Liu Q,
Yashiroda Y, Xu J, Fan Y, Yue J, Yoshida M, Xia T, Myers CL^, Boone C^,
Wang M^
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.nature.com/articles/s41401-019-0231-y> Integrating yeast chemical genomics and
mammalian cell pathway analysis</a> </li> </ul> </td> <td>Acta Pharmacol Sin
</td>
<td>5/2019</td>
<td>Article</td>
</tr>
<tr>
<td>
Simpkins SW, Deshpande R, Nelson J, Li SC, Piotrowski JS, Ward HN, Yashiroda Y,
Osada H, Yoshida M, Boone C, Myers CL
<br>
<ul class="list-unstyled">
<li>
<a href=https://experiments.springernature.com/articles/10.1038/s41596-018-0099-1> Using
BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments</a>
</li> </ul> </td> <td>Nature Protoc
</td>
<td>2/2019</td>
<td>Article</td>
</tr>
<tr>
<td>
Schaefer RJ, Michno J, Jeffers J, Hoekenga O, Dilkes B, Baxter I, Myers CL
<br>
<ul class="list-unstyled">
<li>
<a href=http://www.plantcell.org/content/30/12/2922?utm_source=TrendMD&utm_medium=cpc&utm_campaign=Plant_Cell_TrendMD_0>
Integrating Coexpression Networks with GWAS to Prioritize Causal Genes in Maize</a> </li> </ul>
</td> <td>Plant Cell
</td>
<td>12/2018</td>
<td>Article</td>
</tr>
<tr>
<td>
Simpkins SW, Nelson J, Deshpande R, Li SC, Piotrowski JS, Wilson EH, Gebre AA,
Safizadeh H, Okamoto R, Yoshimura M, Costanzo M, Yashiroda Y, Ohya Y, Osada H,
Yoshida M, Boone C^, Myers CL^
<br>
<ul class="list-unstyled">
<li>
<a href=https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006532> Predicting
bioprocess targets of chemical compounds through integration of chemical-genetic and genetic
interactions</a> </li> </ul> </td> <td>PLoS Comput Biol
</td>
<td>10/2018</td>
<td>Article</td>
</tr>
<tr>
<td>
VanderSluis B*, Costanzo M*, Billmann M, Ward HN, Myers CL^, Andrews BJ^, Boone C
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.sciencedirect.com/science/article/pii/S1369527418300523> Integrating genetic and
protein–protein interaction networks maps a functional wiring diagram of a cell</a> </li> </ul>
</td> <td>Current Opinion in Microbiology
</td>
<td>06/2018</td>
<td>Review</td>
</tr>
<tr>
<td>
Kuzmin E*, VanderSluis B*, Wang W, Tan G, Deshpande R, Chen Y, Usaj M, Balint A,
Mattiazzi Usaj M, van Leeuwen J, Koch EN, Pons C, Dagilis AJ, Pryszlak M, Yang
Wang JZ, Hanchard J, Riggi M, Xu K, Heydari H, San Luis BJ, Shuteriqi E, Zhu H,
Van Dyk N, Sharifpoor S, Costanzo M, Loewith R, Caudy A, Bolnick D, Brown GW,
Andrews BJ^, Boone C^, Myers CL^
<br>
<ul class="list-unstyled">
<li>
<a href=http://science.sciencemag.org/content/360/6386/eaao1729>Systematic analysis of complex
genetic interactions</a> </li> </ul> </td> <td>Science
</td>
<td>04/2018</td>
<td>Article</td>
</tr>
<tr>
<td>
Lu Y, Truman W, Liu X, Bethke G, Zhou M, Myers C, Katagiri F, Glazebrook J
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.plantphysiol.org/content/176/4/3046"> Different Modes of Negative Regulation
of Plant Immunity by Calmodulin-Related Genes</a>
</li>
</ul>
</td>
<td>
Plant Physiology
</td>
<td>
04/2018
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Can Kayatekin, Audra Amasino, Giorgio Gaglia, Jason Flannick, Julia M Bonner, Saranna Fanning,
Priyanka Narayan, M Inmaculada Barrasa, David Pincus, Dirk Landgraf, Justin Nelson, William R Hesse,
Michael Costanzo, Chad L Myers, Charles Boone, Jose C Florez, Susan Lindquist, AMP T2D-GENES
Consortium
<br>
<ul class="list-unstyled">
<li>
<a href=https://www.sciencedirect.com/science/article/pii/S0092867418301703> Translocon Declogger
Ste24 Protects against IAPP Oligomer-Induced Proteotoxicity</a> </li> </ul> </td> <td>Cell
</td>
<td>03/2018</td>
<td>Article</td>
</tr>
<tr>
<td>
Nelson J, Simpkins S, Safizadeh H, Li S, Piotrowski J, Hirano H, Yashiroda Y, Osada H, Yoshida M,
Boone C, Myers C
<br>
<ul class="list-unstyled">
<li>
<a href="https://www.biorxiv.org/content/early/2017/08/07/112854"> MOSAIC: a chemical-genetic
interaction data repository and web resource for exploring chemical modes of action</a>
</li>
</ul>
</td>
<td>
BioRxiv
</td>
<td>
08/2017
</td>
<td>
Pre-print
</td>
</tr>
<tr>
<td>
Simpkins S, Nelson J, Deshpande R, Li S, Piotrowski J, Wilson E, Gebre A, Okamoto R, Ohya Y, Osada H,
Yoshida M, Boone C,Myers C
<br>
<ul class="list-unstyled">
<li>
<a href="https://www.biorxiv.org/content/early/2017/03/01/111252"> Large-scale interpretation of
chemical-genetic interaction profiles using a genetic interaction network</a>
</li>
</ul>
</td>
<td>
BioRxiv
</td>
<td>
03/2017
</td>
<td>
Pre-print
</td>
</tr>
<tr>
<td>
Mechanic L, Lindström S, Daily K, Sieberts S, Amos C, Chen H, Cox N, Dathe M, Feuer E, Guertin M,
Hoffman J, Liu Y, Moore J, Myers C, Ritchie M, Schildkraut J, Schumacher F, Witte J, Wang W, Williams
S, U4C Challenge Participants , U4C Challenge Data Contributors , Gillanders E
<br>
<ul class="list-unstyled">
<li>
<a href="http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006945"> Up For A
Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology</a>
</li>
</ul>
</td>
<td>
PLoS Genet
</td>
<td>
11/2017
</td>
<td>
Editorial
</td>
</tr>
<tr>
<td>
Wang W, Xu Z, Costanzo M, Boone C, Lange C, Myers C
<br>
<ul class="list-unstyled">
<li>
<a href="http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006973">
Pathway-based discovery of genetic interactions in breast cancer</a>
</li>
</ul>
</td>
<td>
PLoS Genet
</td>
<td>
11/2017
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Rizzolo K, Huen J, Kumar A, Phanse S, Vlasblom J, Kakihara Y, Zerineddine H, Minic Z, Snider J, Wang
W, Pons C, Seraphim T, Boczek E, Alber S, Costanxo M, Myers C, Stagjar I, Boone C, Houry W
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.sciencedirect.com/science/article/pii/S2211124717312160"> Features of the
Chaperone Cellular Network Revealed through Systematic Interaction Mapping</a>
</li>
</ul>
</td>
<td>
Cell Reports
</td>
<td>
11/2017
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Fang G, Wang W, Paunic V, Heydari H, Costanzo M, Liu X, Liu X, Oately B, Steinbach M, Van Ness B,
Schadt E, Pankratz N, Boone C, Kumar V, Myers C
<br>
<ul class="list-unstyled">
<li>
<a href="https://www.biorxiv.org/content/early/2017/08/30/182741"> Discovering genetic
interactions bridging pathways in genome-wide association studies</a>
</li>
</ul>
</td>
<td>
BioRxiv
</td>
<td>
08/2017
</td>
<td>
Pre-print
</td>
</tr>
<tr>
<td>
M Usaj, Y Tan, W Wang, B VanderSluis, A Zou, CL Myers^, Costanzo M^, Andrews B^, Boone C^
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.g3journal.org/content/early/2017/03/20/g3.117.040220"> TheCellMap.org: A
Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction
Network.</a>
</li>
</ul>
</td>
<td>
G3: Genes, Genomes, Genetics
</td>
<td>
03/2017
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Piotrowski JS*, Li SC*, Deshpande R*, Simpkins SW*, Nelson J, Yashiroda Y, Barber J, Safizadeh H,
Wilson E, Okada H, Gebre A, Kubo K, Torres N, LeBlanc M, Andrusiak K, Okamoto R, Yoshimura M,
DeRango-Adem E, van Leeuwn J, Shirahige K, Baryshnikova A, Brown AG, Hirano H, Costanzo M, Andrews B,
Ohya Y, Osada H^, Yoshida M^, Myers CL^, Boone C^
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.nature.com/nchembio/journal/vaop/ncurrent/full/nchembio.2436">Functional
Annotation of Chemical Libraries across Diverse Biological Processes</a>
</li>
</ul>
</td>
<td>
Nature chemical biology
</td>
<td>
06/2017
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Traver Hart, Amy Hin Yan Tong, Katie Chan, Jolanda Van Leeuwen, Ashwin Seetharaman, Michael Aregger,
Megha Chandrashekhar,
Nicole Hustedt, Sahil Seth, Avery Noonan, Andrea Habsid, Olga Sizova, Lyudmilla Nedyalkova, Ryan
Climie, Leanne Tworzyanski,
Keith Lawson, Maria Augusta Sartori, Sabriyeh Alibai, David Tieu, Sanna Masud, Patricia Mero,
Alexander Weiss,
Kevin R. Brown, Matej Ušaj, Maximilian Billmann, Mahfuzur Rahman, Michael Costanzo,
Chad L. Myers, Brenda J. Andrews, Charles Boone, Daniel Durocher and Jason Moffat
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.g3journal.org/content/early/2017/06/26/g3.117.041277">Evaluation and Design of
Genome-Wide CRISPR/SpCas9 Knockout Screens</a>
</li>
</ul>
</td>
<td>
G3: Genes, Genomes, Genetics
</td>
<td>
06/2017
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Hillmer RA, Tsuda K, Rallapalli G, Asai S, Truman W, Papke MD, Sakaibara H, Jones JDG, Myers CL,
Katagiri F
<br>
<ul class="list-unstyled">
<li>
<a href="http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006639">The highly
buffered Arabidopsis immune signaling network conceals the functions of its components</a>
</li>
</ul>
</td>
<td>
PLoS Genet
</td>
<td>
04/2017
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
van Leeuwen J*, Pons C*, Mellor JC, Yamaguchi TN, Friesen H, Koschwanez J, Usaj MM, Pechlaner M, Takar
M, Usaj M, VanderSluis B, Andrusiak K, Bansal P, Baryshnikova A, Boone CE, Cao J, Cote A, Gebbia M,
Horecka G, Horecka I, Kuzmin E, Legro N, Liang W, van Lieshout N, McNee M, Luis BJS, Shaeri F,
Shuteriqi E, Sun S, Yang L, Youn JY, Yuen M, Costanzo M, Gingras AC, Aloy P, Oostenbrink C, Murray A,
Graham TR, Myers CL^, Andrews BJ^, Roth FP^, Boone C^
<br>
<ul class="list-unstyled">
<li>
<a href="http://science.sciencemag.org/content/354/6312/aag0839">Exploring genetic suppression
interactions on a global scale</a>
</li>
</ul>
</td>
<td>
Science
</td>
<td>
11/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ
<br>
<ul class="list-unstyled">
<li>
<a href="https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3194-0"> Co-expression
network analysis of duplicate genes in maize (Zea mays L) reveals no subgenome bias</a>
</li>
</ul>
</td>
<td>
BMC Genomics
</td>
<td>
10/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Bass JIF, Pons C, Kozlowski L, Reece-Hoyes JS, Shrestha S, Holdorf AD, Mori A, Myers CL, Walhout AJM:
A gene-centered C
<br>
<ul class="list-unstyled">
<li>
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5081483/pdf/MSB-12-884.pdf">C. elegans
protein-DNA interaction network provides a framework for functional predictions</a>
</li>
</ul>
</td>
<td>
Mol Syst Biol
</td>
<td>
10/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
M Costanzo*, B VanderSluis*, EN Koch*, A Baryshnikova*, C Pons*, G Tan*, W Wang, M Usaj, J Hanchard,
SD Lee, V Pelechano, EB Styles, M Billmann, J van Leeuwen, N van Dyk, ZY Lin, E Kuzmin, J Nelson, JS
Piotrowski, T Srikumar, S Bahr, Y Chen, R Deshpande, CF Kurat, SC Li, Z Li, M Mattiazzi Usaj, H Okada,
N Pascoe, BJ San Luis, S Sharifpoor, E Shuteriqi, SW Simpkins, J Snider, HG Suresh, Y Tan, H Zhu, N
Malod-Dognin, V Janjic, N Przulj, OG Troyanskaya, I Stagljar, T Xia, Y Ohya, AC Gingras, B Raught, M
Boutros, LM Steinmetz, CL Moore, AP Rosebrock, AA Caudy, CL Myers^, B Andrews^, C Boone^
<br>
<ul class="list-unstyled">
<li>
<a href="http://science.sciencemag.org/content/353/6306/aaf1420"> A global genetic interaction
network maps a wiring diagram of cellular function</a>
</li>
</ul>
</td>
<td>
Science
</td>
<td>
09/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D,
Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, Luke B, Muzi-Falconi M, Myers CL, Mitra
RD, Shore D, Brown GW, Zhang Z, Boone C, Andrews BJ
<br>
<ul class="list-unstyled">
<li>
<a
href="http://www.cell.com/cell-systems/abstract/S2405-4712(16)30263-0?_returnURL=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2405471216302630%3Fshowall%3Dtrue">Exploring
Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci</a>
</li>
</ul>
</td>
<td>
Cell Systems
</td>
<td>
09/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Mitra AK, Stessman HAF, Schaefer RJ, Wang W, Myers CL, Van Ness B, Beiraghi S
<br>
<ul class="list-unstyled">
<li>
<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876112/pdf/fgene-07-00088.pdf">Fine-Mapping
of 18q2.1 Locus Identifies Single Nucleotide Polymorphisms Associated with Nonsyndromic Cleft
Lip with or without Cleft Palate</a>
</li>
</ul>
</td>
<td>
Frontiers in Genetics
</td>
<td>
05/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Schaefer R, Michno J, Myers CL
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.sciencedirect.com/science/article/pii/S1874939916301663"> Unraveling gene
function in agricultural species using gene co-expression networks</a>
</li>
</ul>
</td>
<td>
Biochimica et Biophysica Acta- Gene Regulatory Mechanisms
</td>
<td>
01/2016
</td>
<td>
Review
</td>
</tr>
<tr>
<td>
Dickinson Q, Bottoms S, Hinchman L, McIlwain S, Li S, Myers CL, Boone C, Coon JJ, Hebert A, Sato TK,
Landick R, Piotrowski JS
<br>
<ul class="list-unstyled">
<li>
<a href="https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-016-0417-7">
Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational
engineering of a tolerant, xylose-fermenting strain</a>
</li>
</ul>
</td>
<td>
Microb Cell Fact
</td>
<td>
01/2016
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Piotrowski JS, Simpkins SW, Li SC, Deshpande R, McIlwain SJ, Ong IM, Myers CL, Boone C, Andersen RJ
<br>
<ul class="list-unstyled">
<li>
<a href="https://www.ncbi.nlm.nih.gov/pubmed/25618354"> Chemical genomic profiling via barcode
sequencing to predict compound mode of action</a>
</li>
</ul>
</td>
<td>
Methods Mol Biol
</td>
<td>
12/2015
</td>
<td>
Review
</td>
</tr>
<tr>
<td>
Serate J, Xie D, Pohlmann E, Donald C, Shabani M, Hinchman L, Higbee A, Mcgee M, La Reau A, Klinger
GE, Li S, Myers CL, Boone C, Bates DM, Cavalier D, Eilert D, Oates LG, Sanford G, Sato TK, Dale B,
Landick R, Piotrowski J, Ong RG, Zhang YP
<br>
<ul class="list-unstyled">
<li>
<a href="https://biotechnologyforbiofuels.biomedcentral.com/articles/10.1186/s13068-015-0356-2">
Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and
switchgrass: effects on hydrolysate composition, microbial response and fermentation</a>
</li>
</ul>
</td>
<td>
Biotechnology for Biofuels
</td>
<td>
11/2015
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Becker JR, Pons C, Nguyen HD, Costanzo M, Boone C, Myers CL, Bielinsky AK
<br>
<ul class="list-unstyled">
<li>
<a href="http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005659"> Genetic
Interactions Implicating Postreplicative Repair in Okazaki Fragment Processing</a>
</li>
</ul>
</td>
<td>
PLoS Genet
</td>
<td>
11/2015
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
LT MacNeil, C Pons, HE Arda, GE Giese, CL Myers, AJM Walhout
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.cell.com/cell-systems/abstract/S2405-4712(15)00056-3"> Transcription Factor
Activity Mapping of a Tissue-Specific In Vivo Gene Regulatory Network</a>
</li>
</ul>
</td>
<td>
Cell Systems
</td>
<td>
08/2015
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Piotrowski JS, Okada H, Lu F, Li SC, Hinchman L, Ranjan A, Smith DL, Kigbee AJ, Ulbrich A, Coon JJ,
Deshpande R, Bukhman YV, McIlwain S, Ong IM, Myers CL, Boone C, Landick R, Ralph J, Kabbage M, Ohya Y
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.pnas.org/content/112/12/E1490"> Plant-derived antifungal agent poacic acid
targets β-1,3-glucan</a>
</li>
</ul>
</td>
<td>
PNAS
</td>
<td>
02/2015
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Pons C, Costanzo M, Boone C, Myers CL
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.cambridge.org/catalogue/catalogue.asp?isbn=1107013844"> Systems Genetics -
linking genotypes and phenotypes: Computational paradigms for analyzing genetic interaction
networks</a>
</li>
</ul>
</td>
<td>
Cambridge University Press
</td>
<td>
10/2015
</td>
<td>
Book
</td>
</tr>
<tr>
<td>
Abbey DA, Funt J, Lurie-Weinberger MN, Thompson DA, Regev A, Myers CL, Berman J
<br>
<ul class="list-unstyled">
<li>
<a href="https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-014-0100-8"> YMAP: a
pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic
pathogens</a>
</li>
</ul>
</td>
<td>
Genome Medicine
</td>
<td>
11/2014
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Brown JCS, Nelson J, VanderSluis B, Desphande R, Butts A, Kagan S, Polacheck I, Krysan DJ, Myers CL^,
Madhani HD^
<br>
<ul class="list-unstyled">
<li>
<a
href="http://www.cell.com/cell/abstract/S0092-8674(14)01371-3?_returnURL=http%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867414013713%3Fshowall%3Dtrue">
Unraveling the biology of a fungal meningitis pathogen using chemical genetics</a>
</li>
</ul>
</td>
<td>
Cell
</td>
<td>
10/2014
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Wyche TP, Piotrowski JS, Hou Y, Braun D, Deshpande R, McIlwain S, Ong IM, Myers CL, Guzei IA, Westler
WA, Andes DR, Bugni, TS Forazoline A
<br>
<ul class="list-unstyled">
<li>
<a href="http://onlinelibrary.wiley.com/doi/10.1002/ange.201405990/full">Marine‐Derived Polyketide
with Antifungal In Vivo Efficacy</a>
</li>
</ul>
</td>
<td>
Angewandte Chemie
</td>
<td>
09/2014
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Stessman HAF, Lulla A, Xia T, Mitra A, Harding T, Mansoor A, Myers CL, Van Ness BG, Dolloff NG
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.nature.com/leu/journal/v28/n11/full/leu2014214a.html"> High-throughput drug
screening identifies compounds and molecular strategies for targeting proteasome
inhibitor-resistant multiple myeloma</a>
</li>
</ul>
</td>
<td>
Leukemia
</td>
<td>
07/2014
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
DiPrima S, Haarer B, Viggiano S, Pons C, Myers CL, Amberg DC
<br>
<ul class="list-unstyled">
<li>
<a href="http://www.g3journal.org/content/4/8/1491.long"> Linking genetics to structural biology:
complex heterozygosity screening with actin alanine scan alleles identifies functionally related
surfaces on yeast actin</a>
</li>
</ul>
</td>
<td>
G3
</td>
<td>
08/2014
</td>
<td>
Article
</td>
</tr>
<tr>
<td>
Schaefer RJ, Briskine R, Springer NM, Myers CL^
<br>
<ul class="list-unstyled">
<li>
<a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0099193"> Discovering
functional modules across diverse maize transcriptomes using COB, the Co-Expression Browser</a>
</li>
</ul>