unpack

#!/bin/bash
#PBS -q AM

# usage : qsub -l select=1:ncpus=8:mem=8gb -v RUN_NUMBER=<run number> unpack
# e.g.  : qsub -l select=1:ncpus=8:mem=8gb -v RUN_NUMBER=2071 unpack



#defualt inputs for val and cal files
CALFILE=e441.cal
VALFILE=e441_c12.val
RUN="-1"
user="skeleton"

while getopts ":r:v:c:u:" opt; do
    case $opt in
	r)
	    RUN=$OPTARG
	    ;;
	c)
	    CALFILE=$OPTARG
	    ;;
	v)
	    VALFILE=$OPTARG
	    ;;
	u)
	    user=$OPTARG
	    ;;
	\?)
	    echo "Invalid option: -$OPTARG" >&2
	    exit 1
	    ;;
	:)
	    echo "Option -$OPTARG requires an argument." >&2
	    exit 1
	    ;;
    esac
done

if [ $RUN -eq -1 ] || [ $# == 0 ]; then
   echo "Usage: ./unpack -r RUN_NUMBER -c CALIBRATION_FILE -v VALUE_FILE"
   exit
fi

ana_path="$HOME/ana/$user"





if [ ! -d $ana_path ]; then
    echo "There is no directory $ana_path"
    exit
fi

if [ ! -e $ana_path/config/$CALFILE ]; then
    echo "Can't find calibration file $ana_path/config/$CALFILE"
    exit
fi

if [ ! -e $ana_path/config/$VALFILE ]; then
    echo "Can't find val file $ana_path/config/$VALFILE"
    exit
fi

echo "<Info:unpack>:  Run Number $RUN"
echo "<Info:unpack>:  Calibrationfile selected $ana_path/config/$CALFILE"
echo "<Info:unpack>:  Valfile selected $ana_path/config/$VALFILE"

    

qsub -l select=1:ncpus=8:mem=8gb -v RUN_NUMBER=$RUN,VAL_FILE=$VALFILE,CAL_FILE=$CALFILE,ANADIR=${ana_path} ./unpack.pbs

watch -n 0.5 "qstat | grep cagra"