diff --git a/vignettes/gatom-tutorial.Rmd b/vignettes/gatom-tutorial.Rmd index 4a182b2..9700e65 100644 --- a/vignettes/gatom-tutorial.Rmd +++ b/vignettes/gatom-tutorial.Rmd @@ -25,6 +25,7 @@ Further, it illustrates the usage of [mwcsr package](https://cran.r-project.org/ which provides a number of solvers for Maximum Weight Connected Subgraph problem and its variants. Example of using the pipeline include: + * studying metabolic differences between pro- and anti-inflammatory macrophage activation ([Jha et al, 2015](http://dx.doi.org/10.1016/j.immuni.2015.02.005)); * studying metabolic rewiring associated with glucose-independent tumor growth ([Vinent at al, 2015](http://dx.doi.org/10.1016/j.molcel.2015.08.013)); * identification of deregulation of energy metabolism in Trem2-deficient macrophages ([Ulland et al, 2017](http://doi.org/10.1016/j.cell.2017.07.023)); @@ -156,11 +157,7 @@ green to down-regulation (negative log-2 fold change). Blue nodes and edges come from data with absent log-2 fold change values. Bigger size of nodes and width of edges reflect lower p-values. -As layouts are randomly generated, we use `set.seed()` to ensure layout -consistency. - ```{r} -set.seed(42) createShinyCyJSWidget(m) ```