diff --git a/LICENSE b/LICENSE deleted file mode 100644 index 542db9a..0000000 --- a/LICENSE +++ /dev/null @@ -1,21 +0,0 @@ -MIT License - -Copyright (c) 2020 cytomining - -Permission is hereby granted, free of charge, to any person obtaining a copy -of this software and associated documentation files (the "Software"), to deal -in the Software without restriction, including without limitation the rights -to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -copies of the Software, and to permit persons to whom the Software is -furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all -copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE -SOFTWARE. diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..ffcee45 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,27 @@ +# BSD 3-Clause License + +Copyright (c) 2020, Broad Institute of MIT and Harvard +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are met: + +1. Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. +2. Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. +3. Neither the name of the copyright holder nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR +SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER +CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/MANIFEST.in b/MANIFEST.in new file mode 100644 index 0000000..1b4381c --- /dev/null +++ b/MANIFEST.in @@ -0,0 +1,5 @@ +include MANIFEST.in +include LICENSE.md +include README.md +include setup.py +include cytominer_eval/example_data/* diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..ac33cc3 --- /dev/null +++ b/setup.py @@ -0,0 +1,20 @@ +""" +Methods to evaluate dataframes with features and metadata +""" + +from setuptools import setup +from setuptools import find_packages + +setup( + name="cytominer_eval", + description="Methods to evaluate profiling dataframes with features and metadata", + long_description="Profiling experiments result in a profile, or fingerprint, of a biomedical perturbation of cells. This package evaluates the fingeprint.", + maintainer="Gregory Way", + maintainer_email="gregory.way@gmail.com", + url="https://github.com/cytomining/cytominer-eval", + packages=find_packages(), + license="BSD 3-Clause License", + install_requires=["numpy", "pandas", "scikit-learn"], + python_requires=">=3.5", + include_package_data=True, +)