build.yml

name: Build and test BSB

on: [push, pull_request]

jobs:
  build:
    if: github.event_name == 'push' || github.event.pull_request.head.repo.full_name != github.repository
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    steps:
    - uses: actions/checkout@v3.5.0

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4.3.0
      with:
        python-version: ${{ matrix.python-version }}

    - name: Install apt dependencies
      run: |
        sudo apt update
        # Install `libopenmpi` for MPI
        sudo apt install openmpi-bin libopenmpi-dev
        # Install `libhdf5` for `morphio`
        sudo apt install libhdf5-dev

    - name: Install dependencies & self
      run: |
        # Install latest pip
        pip install --upgrade pip
        # Install bsb-core
        pip install .[test,parallel]

    - name: Run tests & coverage
      run: |
        coverage run -p -m unittest discover -v -s ./tests
        mpiexec -n 2 coverage run -p -m unittest discover -v -s ./tests
        BSB_PROFILING=TRUE coverage run -p -m unittest tests.test_env_options
        bash <(curl -s https://codecov.io/bash)