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rsem-prepare-reference with filtered GTF #193

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TdzBAS opened this issue Apr 7, 2023 · 0 comments
Open

rsem-prepare-reference with filtered GTF #193

TdzBAS opened this issue Apr 7, 2023 · 0 comments

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@TdzBAS
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TdzBAS commented Apr 7, 2023

Hi,

when i use rsem-prepare-reference can i provide a filtered GTF file (200 gene-id) which i need for further downstream analysis only. Or shall i provide the whole unfiltered gtf file? I tested that it runs also on the filtered one.

Cheers
@TdzBAS TdzBAS changed the title rsem-prepare-reference rsem-prepare-reference with filtered GTF Apr 7, 2023
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@TdzBAS