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import using tximport for the rsem count table to get integers? #199

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marwa38 opened this issue Jun 8, 2023 · 0 comments
Open

import using tximport for the rsem count table to get integers? #199

marwa38 opened this issue Jun 8, 2023 · 0 comments

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@marwa38
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marwa38 commented Jun 8, 2023

The rsem table doesn't have integers so it is common to use tximport before running differential gene expression dowstream analysis. I am wondering what tximport do in rsem table? what kind of modification?
I am trying to use SARTools (deseq2 method) to get my differential expressed genes but the input count table needs to be an integer so I was thinking to just use round() as I am not sure what tximport modification is doing for the rsem table.
@marwa38 marwa38 changed the title import using tximport rsem count table to get integers? import using tximport for the rsem count table to get integers? Jun 8, 2023
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