cov_test_workflow.yml

name: Run tests in conda environment

on: push

env:
    MESHLEARN_TESTS_ON_GITHUB: true

jobs:
  build-linux:
    runs-on: ubuntu-latest
    strategy:
      max-parallel: 3

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python
      uses: actions/setup-python@v3
      with:
        python-version: 3.7
    - name: Add conda to system path
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        echo $CONDA/bin >> $GITHUB_PATH
    - name: Install dependencies
      run: |
        conda env update --file environment.yml --name base
    - name: Install package
      run: |
        conda install pip
        pip install -e .
    - name: Lint with flake8
      run: |
        conda install flake8
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test with coverage using pytest
      run: |
        conda install pytest pytest-console-scripts
        pip install coverage
        pytest
        coverage run -m pytest
    - name: Upload Coverage to Codecov
      uses: codecov/codecov-action@v2