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update lca gather to just gather #28

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taylorreiter opened this issue Nov 25, 2020 · 1 comment · May be fixed by #79
Open

update lca gather to just gather #28

taylorreiter opened this issue Nov 25, 2020 · 1 comment · May be fixed by #79

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@taylorreiter
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Now that gather is lightening fast, we should replace the sourmash lca gather module with sourmash gather, and update to the new databases.

https://github.com/dib-lab/dib_rotation/blob/master/doc/07_taxonomic_discovery_with_sourmash.md
@ctb
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ctb commented Nov 26, 2020

well, it's not quite lightning fast just yet. And the new databases are quite large :). But yes, eventually!

@ccbaumler ccbaumler linked a pull request Feb 3, 2024 that will close this issue
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[MRG] Update the sourmash doc with gather and tax ccbaumler/dib_rotation
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@ctb @taylorreiter