An error occurred while running the runScGSEA

[cafri1105]

Hello!

Thanks to your package, I'm proceeding with scGSEA with my single-cell RNA seq data.
But I faced a problem.
I keep getting this error while I'm running this code.

What methods do you recommend to solve this problem?
I need your help.
Thank you!

Here's the code I ran.

library(gficf)
library(ggplot2)
library(Seurat)
library(dplyr)

data <- gficf( M = Control.data)
data <- runPCA(data = data,dim = 30,use.odgenes = T)
data <-runReduction(data = data,reduction = "umap",nt = 2,verbose = T,n_neighbors=150)
p = plotCells(data = data) +  xlab("UMAP 1") +  ylab("UMAP 2")
plot(p1)

data <-  runScGSEA(data = data ,
                 geneID = "ensamble",
                 species = "mouse",
                 category = "H",
                 fdr.th = 0.05,
                 nmf.k = 50,
                 rescale = "none",
                 verbose = T)

15:58:22 ... Performing NMF
Error in RcppML::nmf(data = data$gficf, k = nmf.k) : 
  unused argument (data = data$gficf)

15:58:22 ... Performing NMF
Error in RcppML::nmf(data = data$gficf, k = nmf.k) :
unused argument (data = data$gficf)

[gambalab]

Sorry if I answer only now, but I am only now seeing this. Usually, this kind of error is due to the fact that you have installed RcppML from cran. Everything should work if you remove the package and reinstall the last version from github HERE.