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Adjust Open File for varying network modes (GRN/PPI) #1066

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dondi opened this issue Nov 14, 2023 · 0 comments
Open

Adjust Open File for varying network modes (GRN/PPI) #1066

dondi opened this issue Nov 14, 2023 · 0 comments

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@dondi
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dondi commented Nov 14, 2023

The Open File functionality needs to support PPIs more “natively” than they do now. Specifically:

  • only .xlsx and .sif should be allowed for PPI, not .graphml
  • check .sif format for PPI

In addition, instead of having the Network Mode lock in which files can be opened, would it be possible for the open-file command itself to determine the Network Mode based on the selected file? e.g., if the user picks a GraphML file, then we switch to GRN network mode for sure. Also if opening a demo, we can switch the Network Mode automatically at that time

For .sif files, an edge label of pp indicates a PPI. Thus, “pre-reading” a .sif can also set Network Mode upon opening

@dondi dondi added the network label Nov 14, 2023
@dondi dondi changed the title Adjust Network > Open File for PPINs Adjust Network > Open File for PPIs Nov 14, 2023
@dondi dondi changed the title Adjust Network > Open File for PPIs Adjust Open File for PPIs Nov 14, 2023
@dondi dondi changed the title Adjust Open File for PPIs Adjust Open File for varying network modes (GRN/PPI) Nov 14, 2023
@dondi dondi mentioned this issue Nov 28, 2023
@ntran18 ntran18 mentioned this issue Jan 23, 2024
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