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Plasmid Viewer

This is an interactive web app for exploring plasmids at the level of DNA, RNA, and protein sequence, as well as the 3D protein structure. It is built using D3, React, and 3Dmol.

Running locally

  1. Install Node.js.
  2. Clone or download plasmid-viewer repo.
  3. From the terminal, cd to the plasmid-viewer directory.
  4. npm install
  5. npm start
  6. Browse to localhost:3000.

Building

License

The code is licensed under BSD-3, which can be found in LICENSE.

Citing

SXY Wu, SM Douglas, Plasmid Viewer (2017), https://github.com/douglaslab/plasmid-viewer

References

  1. N Rego & D Koes. 3Dmol.js: molecular visualization with WebGL Bioinformatics (2015) 31 (8):1322–1324.