dxapp.json

{
  "name": "vcf_merger",
  "title": "VCF Merging Tool",
  "summary": "Uses bcftools to merge VCFs",
  "dxapi": "1.0.0",
  "version": "0.0.1",
  "inputSpec": [
    {
      "name": "vcf_file_list",
      "label": "File containing list of vcf files to merge",
      "class": "file",
      "optional": false,
      "patterns": [
        "*"
      ],
      "help": ""
    },
    {
      "name": "merged_vcf_filename",
      "label": "Filename of merged vcf file to create",
      "class": "string",
      "optional": false,
      "help": ""
    }
  ],
  "outputSpec": [
    {
      "name": "merged_vcf",
      "label": "Merged VCF file",
      "class": "file",
      "patterns": [
        "*"
      ],
      "help": ""
    }
  ],
  "runSpec": {
    "timeoutPolicy": {
      "*": {
        "hours": 120
      }
    },
    "interpreter": "bash",
    "file": "src/vcf_merger.sh",
    "distribution": "Ubuntu",
    "release": "20.04",
    "version": "0"
  },
  "access": {
    "network": [
      "*"
    ],
    "project": "CONTRIBUTE"
  },
  "regionalOptions": {
    "aws:eu-west-2": {
      "systemRequirements": {
        "*": {
          "instanceType": "mem2_ssd2_v2_x16"
        }
      }
    }
  }
}