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Retrieving a list of marker genes which were used assign cell type labels to clusters #141

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jdd1e16 opened this issue Sep 28, 2020 · 1 comment
Open

Retrieving a list of marker genes which were used assign cell type labels to clusters #141

jdd1e16 opened this issue Sep 28, 2020 · 1 comment

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@jdd1e16
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jdd1e16 commented Sep 28, 2020

Hello, I am using SingleR within python with the BlueprintEncodeData reference dataset. I am successfully getting my predicted cell type annotations for my distinct clusters. I was just wondering however, if there is a way in which i could retrieve a list of genes which are being used to assign the cell type labels to each cluster?
Thanks in advance!
James
@dviraran
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Please post issues in https://github.com/LTLA/SingleR

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@dviraran @jdd1e16