diff --git a/testing/e2e/agent_container_test.go b/testing/e2e/agent_container_test.go
index 158645a8c0..df4f52ca4b 100644
--- a/testing/e2e/agent_container_test.go
+++ b/testing/e2e/agent_container_test.go
@@ -37,6 +37,7 @@ type AgentContainerSuite struct {
 }
 
 func TestAgentContainerSuite(t *testing.T) {
+	suite.T().Skip("Flakey test suite skipped. See https://github.com/elastic/fleet-server/issues/3909")
 	suite.Run(t, new(AgentContainerSuite))
 }