Microservices based solutions and applied AI - specifically object detection.
-Host-pathogen interactions at the level of microbiome and single cells. Human Microbiome Project. High-throughput diagnostics. Electronic health records. Emerging properties of networks in a biological and social context. Self-organized systems. +## Research interests -## Languages - -Italian: Mother tongue -English: Perfect oral & written fluency -French: Working knowledge +Data science, Web Development, Cloud computing, DevOps and Blockchain.
## Education +`2019-now(exp 2025)` +__BASc, Corporación Universitaria del Caribe CECAR__ Ingenieria de sistemas -`2009-now` -__Imperial College London__ - -- MBBS Graduate Entry Medicine Programme - - -`2006-2012` -__Harvard Medical School & Massachusets Institute of Technology__ - -- PhD, Biomedical Engineering, - [Harvard/MIT Health Science & Technology Institute](http://hst.mit.edu) -- Thesis: [High-throughput experimental and computational tools for exploring immunity and the microbiome](https://speakerdeck.com/u/elipapa/p/phd-defense-talk-1) -- Representative courses: - - _Harvard Medical School_ - pathology, renal pathophysiology, respiratory pathophysiology, cardiac pathophysiology. - - _MIT_ - biomechanics, statistical learning, systems microbiology, forces fields and flows in biological systems, fluid mechanics, heat transfer, numerical modeling. - - -`2006-2008` -__Massachusets Institute of Technology__ - -- SM in Mechanical Engineering - - -`2001-2005` -__University of Toronto__ - -- BASc (Honors) -- Engineering Science, Biomedical Option - - -## Fellowships - -`2010-2011` -NSERC Postgraduate D Scholarship, National Science Engineering Research Council, Canada - -`2008-2009` -Poitras pre-doctoral fellowship - -`2007` -Martino Scholar, Harvard/MIT Health Science Tech. Inst. - -`2005-2008` -NSERC Postgraduate M Scholarship, National Science Engineering Research Council, Canada - -`2005` -OGS Postgraduate Scholarship (declined), Ontario Government, Canada - -`2004` -NSERC Summer Research Award, National Science Engineering Research Council, Canada - -`2003` -\#2 Canadian Army University Course Undergrad Scholarship,University of Toronto - -## Awards - -`2012` -Bursary recipient, *Exploring Human Host-Microbiome Interactions in Health and Disease*, Wellcome Trust Scientific Conferences - -`2008` -Martha Gray Prizes for Excellence in Research, Annual Forum, Harvard/MIT Health Science Tech. Inst. - -`2008` -Competition Semifinalist, MIT 100k Business Plan - -`2004` -University of Toronto Life Sciences Award, University of Toronto - -`2002-04` -Silver T – academic athletic excellence, University of Toronto - -`2003` -OUA Academic Achievement Award, Ontario, Canada - -`2001` -Ontario Scholar, Government of Ontario, Canada - -## Publications - - - -### Journals - -`2012` -*Eliseo Papa*, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah Pacocha Preheim,Dirk Gevers,Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm. -[Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.](http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039242) -**PLoS ONE** 2012;7(6):e39242. - -`2011` -Rhiannon White, Sachiko Miyata, *Eliseo Papa*, Eric Spooner, Kleoniki Gounaris, Murray Selkirk, Katerina Artavanis-Tsakonas. -Characterisation of the Trichinella spiralis deubiquitinating enzyme, TsUCH37, an evolutionarily conserved proteasome interaction partner. -**PLoS Negl Trop Dis.** 2011 Oct;5(10):e1340. - -`2011` -Katerina Artavanis-Tsakonas, Pia V Kasperkovitz, *Eliseo Papa*, Michael L Cardenas, Nida S Khan, Annemarthe G Van der Veen, Hidde L Ploegh and Jatin M Vyas. -The Tetraspanin CD82 is Specifically Recruited to Fungal and Bacterial Phagosomes Prior to Acidification. -**Infection and Immunity** 2011 79(3):1098-106\ - -`2009` -Adebola Ogunniyi, Craig Story, *Eliseo Papa*, Eduardo Guillen, J. Christopher Love. -Screening Individual Hybridomas by Microengraving to Discover Monoclonal Antibodies. -**Nature Protocols** 2009 4(5):767-82 - -`2009` -Jehnna L. Ronan, Craig Story, *Eliseo Papa*, J. Christopher Love. -Optimization of the surfaces used to capture antibodies from single hybridomas reduces the time required for microengraving. -**Journal of Immunological Methods** 2009, 340(2):164-9\ - -`2008` -Craig Story\*, *Eliseo Papa\* (co-author)*, Chih-Chi Andrew Hu, Jehnna L Ronan, Hidde L Ploegh, J.Christopher Love. -Profiling Antibody Responses by Multiparametric Analysis of Single B Cells. -**PNAS** 2008 105(46):17902-7 - -`2005` -Hans Fischer, *Eli Papa*, Lichuan Liu, K. Sandy Pang, Warren C. W. Chan. -Preliminary Results: Exploring the Interactions of Quantum Dots with Whole Blood Components. -**SPIE Proceedings** 2005 5969,54 - -`2004` -Wen Jiang, *Eli Papa*, Hans Fischer, Sawitri Mardyani, Warren C.W. Chan. -Semiconductor quantum dots as contrast agents for whole animal imaging. -**Trends in Biotechnology** 2004 22:12 - - -### Posters - -`2012` -White RR, Morrow M, Miyata S, Papa E, Spooner E, Selkirk M, Gounaris K, Das C, Artavanis-Tsakonas K -Characterisation of the Trichinella Spiralis Deubiquitinating Enzyme, TsUCH37 -*Molecular and Cellular Biology of Helminth Parasites VII* - -`2012` -Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B Schauer, Doyle V Ward, Joshua R Korzenik, Ramnik J Xavier, Athos Bousvaros, Eric J Alm. -[Diagnosing IBD from the fecal microbiome](http://eliseopapa.org/downloads/documents/ibdML-poster.pdf) -*Exploring Human Host-Microbiome Interactions in Health and Disease, Wellcome Trust Scientific Conferences* - -`2008` -High-Throughput and High-Content Screening of Antibody Responses from Single Cells -*AIChE annual meeting, Nanoscale Science Engineering Forum* - -`2008` -Applying Ligands to B Cell Receptors by Microfluidics -*AIChE annual meeting, Engineering Fundamentals in Life Sciences* - -`2008` -Microengraving for high-throughput affinity mapping of humoral responses -*Harvard/MIT HST Forum* - -`2008` -Multi-variate profiling of B cell immune responses -*Novartis Vaccine Symposium* - - -### Patents - -`2009` -Composition of an Array of Microwells with an Integrated Microfluidic System, USA Serial No. 12/390279 - - -## Research - -`2009-now` -__Alm Laboratory for Microbiology, Prof. Eric J. Alm__, MIT - -- Human Microbiome Project -- Bioinformatic analysis of large datasets -- Microbial evolution, phylogenetics - - -`2006-2009` -__Laboratory of Hidde L. Ploegh__, Whitehead Institute, MIT - -- Affinity and isotype mapping of antibody secretion in individual primary B cells. -- Development of computational and statistical tools to monitor and predict evolution of immune responses -- Murine antibody cloning and expression; fluorescence tagging -- Real time fluorescence microcopy; advanced image analysis - - -`2004-2005` -__Biomedical Nanotechnology Group, Prof. W C. Chan__, University of Toronto - -- Nanoparticles cytotoxicity -- Quantum Dots synthesis and characterization (TEM, Absorption, PL, X-IRD) -- Real time fluorescence microscopy, single molecule spectroscopy and biophysics. - - -`2003` -__Biomaterials Group, Prof. M.C.Tanzi__, Politecnico di Milano, Italy - -- Synthesis of biocompatible polymeric scaffolds for tissue engineering applications. -- Morphological, mechanical and functional characterization of polyurethane scaffolds. - - -## Other employment - -`2006` -__ESL Teacher, Inlingua Language School,__ Brescia, Italy - -- Teaching approx. 12hrs/week on individual basis and to large groups -- Provided on site focussed training for companies - - -`2004-2005` -__Residence Don, St.Michael’s College Residence,__ University of Toronto, Canada - -- Mediate conflicts and provide academic or personal consulting. -- Trained in cultural competence and conflict resolution -- Responsible to enforce rules and to foster an accepting community - - -`2000-2002` -__IT Consultant System Admin, Ital Engineering s.a.s.,__ Brescia, Italy - -- Interviewed the customer and performed an organizational analysis -- Regularly performed formal presentations to the management - - -`2000` -__Graphic Designer, Photo Image Studio,__ Brescia, Italy - -- Assisted photographers in the preparation of gallery exhibitions and openings - - -## Extracurricular - -`2006-2008` -__Collegiate Cycling. [MIT Cycling Team](http://cycling.mit.edu/www/home)__ - -- National Collegiate Road Champions -- Eastern Collegiate Cycling Conference Road Champions -- *Captain*, Cyclocross, 2nd US National Championship -- Eastern Collegiate Cycling Conference Road Champions -- Cyclocross, US National Champions - - -`2006` -__Competitive Triathlon. Team Atletica Desenzano__ - -- 9th cat. at ITU Bardolino’s International Triathlon - - -`2003-2004` -__Competitive Sailing. Italian sailing federation (FIV).__ - -- 12th at European IMS Sailing Championship -- 6th at Canadian J105 Championship - - -`2004` -__Engineers Without Borders.__ - -- University of Toronto Conference delegate - - -`2002` -__University of Toronto Varsity Waterpolo.__ - -- OUA Conference Champions - - -`1998-2001` -__Nuoto Club Brescia Swimming Club__ - -- Regional level competitions - - - -## Volunteering +`2023` +__Universidad Sergio Arboleda__ Technologist in Web Application Development -`2005` -__Field Operative, AISPO, San Raffaele del Monte Tabor Foundation.__ Milan, Italy +`2022` +__Desarrollo de aplicaciones web Misión TIC 2022__ -- Streamlined diagnostic routines, Kampala’s Hospital & Gulu’s outpost, Uganda -- Consulted regarding the infrastructure, human resources and logistics of the Kampala’s hospital +`Expires on December 29, 2025` +__Microsoft Certified: Azure AI Engineer Associate__ +`Expires on February 12, 2025` +__Microsoft Certified: Azure Data Scientist Associate__ -## Interests -Jazz music. International relations. Semiotics and -its implications on mass psychology. Buddhism, Zen and oriental -philosophies. Reading classics of Italian and English literature. -Travelled by kayak along the major European rivers. Rock Climbing. +### Computing +Front-End Web development - Functional knowledge of React/NextJS, Vue, Angular - +Mobile development - Functional knowledge of Xamarin and react-native +Cloud ops - Docker, Kubernetes, Azure cloud + diff --git a/media/davewhipp-print.css b/media/davewhipp-print.css new file mode 100644 index 0000000000..79b3dddd84 --- /dev/null +++ b/media/davewhipp-print.css @@ -0,0 +1,194 @@ +/* http://meyerweb.com/eric/tools/css/reset/ + v2.0 | 20110126 + License: none (public domain) +*/ + +html, body, div, span, applet, object, iframe, +h1, h2, h3, h4, h5, h6, p, blockquote, pre, +a, abbr, acronym, address, big, cite, code, +del, dfn, em, img, ins, kbd, q, s, samp, +small, strike, strong, sub, sup, tt, var, +b, u, i, center, +dl, dt, dd, ol, ul, li, +fieldset, form, label, legend, +table, caption, tbody, tfoot, thead, tr, th, td, +article, aside, canvas, details, embed, +figure, figcaption, footer, header, hgroup, +menu, nav, output, ruby, section, summary, +time, mark, audio, video { + margin: 0; + padding: 0; + border: 0; + font-size: 100%; + font: inherit; + vertical-align: baseline; +} +/* HTML5 display-role reset for older browsers */ +article, aside, details, figcaption, figure, +footer, header, hgroup, menu, nav, section { + display: block; +} +body { + line-height: 1; +} +ol, ul { + list-style: none; +} +blockquote, q { + quotes: none; +} +blockquote:before, blockquote:after, +q:before, q:after { + content: ''; + content: none; +} +table { + border-collapse: collapse; + border-spacing: 0; +} + +/* end of reset */ + + + +body { + font: normal normal 400; + font-size: 12pt; + line-height: 1.35em; + /*also written as... font: normal normal 400 100%/1.5em;*/ + font-family: Avenir,Verdana,sans-serif; + /*margin-top: 1em; + margin-left: 1em;*/ +} + +p { + position: relative; + left: 25%; + margin-bottom: 0.2em; + margin-right: 0; + width: 60%; +} + +code { + font: normal normal; + font-size: 90%; + /*line-height: 1em;*/ + font-family: Monaco,Menlo,monospace,sans-serif; + color: #ccc; +} + +p code { + position: absolute; + text-align: right; + right: -20%; +} + + +ul { + position: relative; + left: 25%; + width: 75%; + margin-bottom: 1em; + /*margin-top: -0.5em;*/ +} + +/*uncomment to get dashes in the list*/ +/*li:before { + content: "-"; + position: relative; + left: -0.25em; +}*/ + +li { + /*second line indent*/ + padding-left: 1.25em; + text-indent: -1.25em; + /*color: #777;*/ +} + +li ul { + position: relative; + left: 0; + width: 100%; + margin-top: 0.25em; +} + +h1,h2,h3,h4 { + font-weight: 400; + font-family: Avenir,Cousine,Verdana,sans-serif; + width: 80%; +} + +h1 { + text-align: left; + font-size: 3em; + line-height: 1em; + position: relative; + left: 25%; +} + +h1+p { + /*subtitle*/ + font-style: italic; + font-size: 110%; +} + +h2 { + font-size: 1.1em; + color: #a00; + margin-top: 2em; + position: relative; + top: 1.2em; + text-align: right; + width: 20%; +} + + +h3 { + font-size: 1em; + line-height: 2em; + color: #ccc; + position: relative; + top: 1.6em; + text-align: right; + width: 20%; +} + +a { + color: inherit; + text-decoration:none +} + +a:hover { + color:#39f +} + +#webaddress { + margin-top: 1em; + position: relative; + left: 25%; + color: #ccc; + font-family: Monaco,Menlo,monospace,sans-serif; + font-size: 90%; +} + +#webaddress a { + text-decoration: none; +} + +em { + font-style: normal; + color: #2d4e5e +} + +strong { + font-weight: bold; +} + +#ghbutton { + display: none; + visibility: hidden; +} + + + diff --git a/media/davewhipp-screen.css b/media/davewhipp-screen.css new file mode 100644 index 0000000000..adacc451b8 --- /dev/null +++ b/media/davewhipp-screen.css @@ -0,0 +1,195 @@ +/* http://meyerweb.com/eric/tools/css/reset/ + v2.0 | 20110126 + License: none (public domain) +*/ + +html, body, div, span, applet, object, iframe, +h1, h2, h3, h4, h5, h6, p, blockquote, pre, +a, abbr, acronym, address, big, cite, code, +del, dfn, em, img, ins, kbd, q, s, samp, +small, strike, strong, sub, sup, tt, var, +b, u, i, center, +dl, dt, dd, ol, ul, li, +fieldset, form, label, legend, +table, caption, tbody, tfoot, thead, tr, th, td, +article, aside, canvas, details, embed, +figure, figcaption, footer, header, hgroup, +menu, nav, output, ruby, section, summary, +time, mark, audio, video { + margin: 0; + padding: 0; + border: 0; + font-size: 100%; + font: inherit; + vertical-align: baseline; +} +/* HTML5 display-role reset for older browsers */ +article, aside, details, figcaption, figure, +footer, header, hgroup, menu, nav, section { + display: block; +} +body { + line-height: 1; +} +ol, ul { + list-style: none; +} +blockquote, q { + quotes: none; +} +blockquote:before, blockquote:after, +q:before, q:after { + content: ''; + content: none; +} +table { + border-collapse: collapse; + border-spacing: 0; +} + +/* end of reset */ + + + +body { + font: normal normal 400; + font-size: 100%; + line-height: 1.5em; + /*also written as... font: normal normal 400 100%/1.5em;*/ + font-family: Avenir,Verdana,sans-serif; + margin-top: 1em; + margin-left: 1em; +} + +p { + position: relative; + left: 25%; + margin-bottom: 0.7em; + margin-right: 0; + width: 55%; +} + +code { + font: normal normal; + font-size: 90%; + /*line-height: 1em;*/ + font-family: Monaco,Menlo,monospace,sans-serif; + color: #aaa; +} + +p code { + position: absolute; + text-align: right; + right: -20%; +} + + +ul { + position: relative; + left: 25%; + width: 75%; + margin-bottom: 1.5em; + margin-top: -0.5em; +} + +/*uncomment to get dashes in the list*/ +/*li:before { + content: "-"; + position: relative; + left: -0.25em; +}*/ + +li { + /*second line indent*/ + padding-left: 1.25em; + text-indent: -1.25em; + /*color: #777;*/ +} + +li ul { + position: relative; + left: 0; + width: 100%; + margin-top: 0.25em; +} + +h1,h2,h3,h4 { + font-weight: 400; + font-family: Avenir,Cousine,Verdana,sans-serif; + width: 80%; +} + +h1 { + text-align: left; + font-size: 3em; + line-height: 1em; + position: relative; + left: 25%; +} + +h1+p { + /*subtitle*/ + font-style: italic; + font-size: 110%; +} + +h2 { + font-size: 1.1em; + color: #bc412b; + margin-top: 3em; + position: relative; + top: 1.4em; + text-align: right; + width: 20%; +} + +h3 { + font-size: 1em; + line-height: 2em; + position: relative; + top: 1.7em; + text-align: right; + width: 20%; +} + +a { + color: inherit; + /*text-decoration:none*/ +} + +a:hover { + color:#39f +} + +#webaddress { + margin-top: 1em; + position: relative; + left: 25%; + color: #bc412b; + font-family: Monaco,Menlo,monospace,sans-serif; + font-size: 100%; +} + +#webaddress a { + text-decoration: none; +} + +em { + /* font-weight: bold; */ + font-style: italic; +} + +strong { + font-weight: bold; +} + +#address { + display: none; +} + + + +/* +@media only screen and (max-width: 480px) { + make one column somehow... +}*/ \ No newline at end of file diff --git a/media/cv-print.css b/media/kjhealy-print.css similarity index 86% rename from media/cv-print.css rename to media/kjhealy-print.css index 4eda580ad3..1996e09a58 100644 --- a/media/cv-print.css +++ b/media/kjhealy-print.css @@ -53,8 +53,8 @@ table { body { font: normal normal 400; - font-size: 65%; - line-height: 1.3em; + font-size: 10pt; + line-height: 1.35em; /*also written as... font: normal normal 400 100%/1.5em;*/ font-family: Verdana,sans-serif; /*margin-top: 1em; @@ -63,33 +63,32 @@ body { p { position: relative; - left: 25%; - margin-bottom: 0.5em; + left: 28%; + margin-bottom: 0.2em; margin-right: 0; - width: 65%; + width: 70%; } code { - /* these are the dates */ font: normal normal; - font-size: 55%; + font-size: 60%; /*line-height: 1em;*/ font-family: Menlo,monospace,sans-serif; - color: #9a9a9a; + color: #ccc; } p code { position: absolute; - left: -14%; + left: -11%; } ul { position: relative; - left: 25%; + left: 28%; width: 65%; - margin-bottom: 1.5em; - margin-top: -0.5em; + margin-bottom: 1em; + /*margin-top: -0.5em;*/ } /*uncomment to get dashes in the list*/ @@ -124,7 +123,7 @@ h1 { font-size: 3em; line-height: 1em; position: relative; - left: 25%; + left: 28%; } h1+p { @@ -136,20 +135,22 @@ h1+p { h2 { font-size: 1.1em; color: #a00; - margin-top: 3em; + margin-top: 2em; position: relative; top: 1.2em; text-align: right; - width: 15%; + width: 18%; } + h3 { font-size: 1em; line-height: 2em; + color: #ccc; position: relative; top: 1.6em; text-align: right; - width: 15%; + width: 18%; } a { @@ -164,8 +165,8 @@ a:hover { #webaddress { margin-top: 1em; position: relative; - left: 25%; - color: #aaa; + left: 28%; + color: #ccc; font-family: Menlo,monospace,sans-serif; font-size: 80%; } @@ -175,13 +176,18 @@ a:hover { } em { - font-style: italic; + font-style: normal; + color: #2d4e5e } strong { font-weight: bold; } +#ghbutton { + display: none; + visibility: hidden; +} diff --git a/media/cv-screen.css b/media/kjhealy-screen.css similarity index 99% rename from media/cv-screen.css rename to media/kjhealy-screen.css index 8a664ef1e7..9bff2e901e 100644 --- a/media/cv-screen.css +++ b/media/kjhealy-screen.css @@ -174,6 +174,7 @@ a:hover { } em { + font-weight: bold; font-style: italic; } @@ -185,6 +186,8 @@ strong { display: none; } + + /* @media only screen and (max-width: 480px) { make one column somehow...