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On line 285 of de_plots.py, the df_gene_counts data frame (which I believe is read from all_gene_counts.tsv?) is written to results_dge.tsv. This seems to overwrite the differential gene expression results file with gene counts?
Relevant log output
Not applicable to bug report.
Application activity log entry
No response
Were you able to successfully run the latest version of the workflow with the demo data?
yes
Other demo data information
No response
The text was updated successfully, but these errors were encountered:
Operating System
Ubuntu 22.04
Other Linux
No response
Workflow Version
v1.5.0
Workflow Execution
Command line (Local)
Other workflow execution
No response
EPI2ME Version
No response
CLI command run
Not applicable to bug report.
Workflow Execution - CLI Execution Profile
None
What happened?
On line 285 of
de_plots.py, thedf_gene_countsdata frame (which I believe is read fromall_gene_counts.tsv?) is written toresults_dge.tsv. This seems to overwrite the differential gene expression results file with gene counts?Relevant log output
Application activity log entry
No response
Were you able to successfully run the latest version of the workflow with the demo data?
yes
Other demo data information
No response
The text was updated successfully, but these errors were encountered: