From 1c5278f854f94b1162cf64e05afb2c3464c36392 Mon Sep 17 00:00:00 2001 From: equipeGST Date: Tue, 18 Oct 2022 12:52:58 +0200 Subject: [PATCH] Add XM_filter's log for bowtie2 --- RiboDoc/Snakefile | 1 + 1 file changed, 1 insertion(+) diff --git a/RiboDoc/Snakefile b/RiboDoc/Snakefile index 3d7389b..51460e9 100755 --- a/RiboDoc/Snakefile +++ b/RiboDoc/Snakefile @@ -732,6 +732,7 @@ rule samtools_filter_transcriptome: uniq_header = local_path + "logs/samtools_filter_transcriptome/{sample}.uniq_header.log", grep_core_hisat2 = local_path + "logs/samtools_filter_transcriptome/{sample}.grep_core_hisat2.log", XM_filter_hisat2 = local_path + "logs/samtools_filter_transcriptome/{sample}.XM_filter_hisat2.log", + XM_filter_bowtie2 = local_path + "logs/samtools_filter/{sample}.XM_filter_bowtie2.log", grep_core_bowtie2 = local_path + "logs/samtools_filter_transcriptome/{sample}.grep_core_bowtie2.log", view_bam = local_path + "logs/samtools_filter_transcriptome/{sample}.view_bam.log", sort_bam = local_path + "logs/samtools_filter_transcriptome/{sample}.sort_bam.log"