From 236f1c297564be11954f1c43c8010ae53be0fe68 Mon Sep 17 00:00:00 2001
From: Eric Talevich <eric.talevich@gmail.com>
Date: Tue, 13 Sep 2016 15:42:38 -0700
Subject: [PATCH] docker: add new dependencies; revert to interactive shell

---
 docker/Dockerfile | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/docker/Dockerfile b/docker/Dockerfile
index 2740ac40..df5d81d3 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -15,10 +15,10 @@ RUN apt-get update && apt-get install -y \
     python-tk \
     r-base-core \
     zlib1g-dev
-RUN pip install pandas pysam pyvcf pyfaidx
+RUN pip install future futures pandas pysam pyvcf pyfaidx
 RUN Rscript -e "source('http://bioconductor.org/biocLite.R'); biocLite('PSCBS', 'cghFLasso')"
-RUN pip install cnvkit==0.7.11
+RUN pip install cnvkit
 
-ENTRYPOINT ["cnvkit.py"]
-CMD ["--help"]
-# CMD ["bash"]
+# ENTRYPOINT ["cnvkit.py"]
+# CMD ["--help"]
+CMD ["bash"]