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Trouble about input format #5

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zax-bioinforer opened this issue Aug 13, 2021 · 1 comment
Open

Trouble about input format #5

zax-bioinforer opened this issue Aug 13, 2021 · 1 comment

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@zax-bioinforer
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zax-bioinforer commented Aug 13, 2021

Hi,fgvieira!there is something confusing for me.
I am estimating the divergence time of microarray data,so I choose ngsF-HMM to do.
this is my code :
ngsF-HMM --geno geno.tsv.gz --pos pos.txt --n_ind 53 --n_sites 53827 --out test

and it tells me:
[read_geno] wrong GENO file format. Less fields than expected!

my --geno file format is a matrix ,columns represent samples;rows represents sites, and genotypes are coded as {0,1,2}.

I can't tell what is the reason it went wrong.

Is it possible that you can send me a format.

@fgvieira
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Can you send me a small test case?
For example, the first 100 or 1000 lines of files geno.tsv.gz and pos.txt.

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