_bookdown.yml

book_filename: "Choosing Genomics Tools"
chapter_name: "Chapter "
repo: https://github.com/jhudsl/Choosing_Genomics_Tools
rmd_files: ["index.Rmd",
            "01-intro.Rmd",
            "02-genomics_overview.Rmd",
            "03-whats-metadata.Rmd",
            "04-considerations-for-choosing.Rmd",
            "05-general-data-analysis-tools.Rmd",
            "06-sequencing-data.Rmd",
            "07-microarray-data.Rmd",
            "08-annotating-genomes.Rmd",
            "09-DNA.Rmd",
            "09a-WGS-and-WXS.Rmd",
            "10-RNA.Rmd",
            "10a-bulk-RNA-seq.Rmd",
            "10b-single-cell-RNA-seq.Rmd",
            "10c-spatial-transcriptomics.Rmd",
            "11-chromatin.Rmd",
            "11a-ATAC-Seq.Rmd",
            "11b-sc-ATAC-Seq.Rmd",
            "11c-ChIP-Seq.Rmd",
            "11d-CUT-and-RUN.Rmd",
            "12-methylation.Rmd",
            "13-microbiome.Rmd",
            "14-tool-glossary.Rmd",
            "About.Rmd",
            "References.Rmd"]
new_session: yes
bibliography: book.bib
delete_merged_file: true
language:
  ui:
    chapter_name: "Chapter"
output_dir: "docs"