From cafe20a6d0e97b109e09bbfba552e8781712317c Mon Sep 17 00:00:00 2001
From: Kate Isaac <41767733+kweav@users.noreply.github.com>
Date: Fri, 2 Aug 2024 15:42:19 -0400
Subject: [PATCH] fill out shell a bit more

---
 02_cancer_informatic_data_viz.Rmd | 17 +++++++++++++++++
 03_practice_overview.Rmd          | 12 ++++++++++++
 03a_practice_general.Rmd          | 12 ++++++++++++
 03b_practice_singlecell.Rmd       | 12 ++++++++++++
 04_other_practice.Rmd             | 17 +++++++++++++++++
 05_wrapping_up.Rmd                | 18 ++++++++++++++++++
 6 files changed, 88 insertions(+)
 create mode 100644 02_cancer_informatic_data_viz.Rmd
 create mode 100644 03_practice_overview.Rmd
 create mode 100644 03a_practice_general.Rmd
 create mode 100644 03b_practice_singlecell.Rmd
 create mode 100644 04_other_practice.Rmd
 create mode 100644 05_wrapping_up.Rmd

diff --git a/02_cancer_informatic_data_viz.Rmd b/02_cancer_informatic_data_viz.Rmd
new file mode 100644
index 0000000..7c87a5c
--- /dev/null
+++ b/02_cancer_informatic_data_viz.Rmd
@@ -0,0 +1,17 @@
+# Data Visualization for Cancer Informatics
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+## Learning Objectives
+
+This chapter will cover:
+
+- {LO1}
+- {LO2}
+
+## Common types of Cancer Data
+## Common research questions when working with cancer data
+## Most common graph types in cancer informatics
+## Available technologies for data visualizations in cancer informatics
diff --git a/03_practice_overview.Rmd b/03_practice_overview.Rmd
new file mode 100644
index 0000000..e439d1d
--- /dev/null
+++ b/03_practice_overview.Rmd
@@ -0,0 +1,12 @@
+# Practicing Cancer Informatics Data Visualizations
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+## Learning Objectives
+
+This chapter will cover:
+
+- {LO1}
+- {LO2}
diff --git a/03a_practice_general.Rmd b/03a_practice_general.Rmd
new file mode 100644
index 0000000..0feb092
--- /dev/null
+++ b/03a_practice_general.Rmd
@@ -0,0 +1,12 @@
+# Practicing: With General Data
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+## Learning Objectives
+
+This chapter will cover:
+
+- {LO1}
+- {LO2}
diff --git a/03b_practice_singlecell.Rmd b/03b_practice_singlecell.Rmd
new file mode 100644
index 0000000..e973e9f
--- /dev/null
+++ b/03b_practice_singlecell.Rmd
@@ -0,0 +1,12 @@
+# Practicing: With Single Cell Data
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+## Learning Objectives
+
+This chapter will cover:
+
+- {LO1}
+- {LO2}
diff --git a/04_other_practice.Rmd b/04_other_practice.Rmd
new file mode 100644
index 0000000..0cf23bc
--- /dev/null
+++ b/04_other_practice.Rmd
@@ -0,0 +1,17 @@
+# Other ways to practice
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+## Learning Objectives
+
+This chapter will cover:
+
+- {LO1}
+- {LO2}
+
+
+## Bioviz data visualization challenges
+## Plotnine Contest Gallery
+## Case studies from the Fred Hutch Data Visualization Center
diff --git a/05_wrapping_up.Rmd b/05_wrapping_up.Rmd
new file mode 100644
index 0000000..17c566a
--- /dev/null
+++ b/05_wrapping_up.Rmd
@@ -0,0 +1,18 @@
+# Wrapping up
+
+```{r, include = FALSE}
+ottrpal::set_knitr_image_path()
+```
+
+## Learning Objectives
+
+This chapter will cover:
+
+- {LO1}
+- {LO2}
+
+## In summary
+
+## Additional Resources
+
+## See next