diff --git a/src/cli.rs b/src/cli.rs
index 82047ce3..7fd77b7c 100644
--- a/src/cli.rs
+++ b/src/cli.rs
@@ -107,12 +107,12 @@ pub enum Commands {
     Fire(FireOptions),
     /// Extract fiberseq data into plain text files.
     ///
-    /// See https://fiberseq.github.io/fibertools-rs/docs/extract.html for a description of the outputs.
+    /// See https://fiberseq.github.io/fibertools/extracting/extract.html for a description of the outputs.
     #[clap(visible_aliases = &["ex", "e"])]
     Extract(ExtractOptions),
     /// This command centers fiberseq data around given reference positions. This is useful for making aggregate m6A and CpG observations, as well as visualization of SVs.
     ///
-    ///  See https://fiberseq.github.io/fibertools-rs/docs/center.html for a description of the output.
+    ///  See https://fiberseq.github.io/fibertools/extracting/center.html for a description of the output.
     #[clap(visible_aliases = &["c", "ct"])]
     Center(CenterOptions),
     /// Infer footprints from fiberseq data
diff --git a/src/main.rs b/src/main.rs
index 7ec7b912..135b982e 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -66,7 +66,7 @@ pub fn main() -> Result<(), Error> {
                 "\n{}\n\t{}\n\t{}\n", 
                 "WARNING: m6A predictions are slower without the pytorch backend.".bright_yellow().bold(),
                 "Consider recompiling via cargo with: `--all-features`.",
-                "For detailed instructions see: https://fiberseq.github.io/fibertools-rs/INSTALL.html."
+                "For detailed instructions see: https://fiberseq.github.io/fibertools/install.html."
             );
             subcommands::predict_m6a::read_bam_into_fiberdata(predict_m6a_opts);
         }