Releases: fiberseq/fibertools-rs
Releases · fiberseq/fibertools-rs
bio-io v0.3.2
Chore
- improve progress bar
- improve progress bar
Commit Statistics
- 5 commits contributed to the release.
- 2 commits were understood as conventional.
- 0 issues like '(#ID)' were seen in commit messages
Commit Details
bio-io v0.3.1
Chore
- update deps
Other
- add docs.
Bug Fixes
- progress bar display issues.
Commit Statistics
- 5 commits contributed to the release over the course of 36 calendar days.
- 55 days passed between releases.
- 3 commits were understood as conventional.
- 0 issues like '(#ID)' were seen in commit messages
Commit Details
0.3.1 (2023-08-13)
Release Notes
Fixed
Added commas to wide format of ft center.
New Features
- move progress bar into bamchunk iterator, unify progress bar.
- better progress bar for extract.
- move progress bar into bamchunk iterator, unify progress bar.
- move progress bar into bamchunk iterator, unify progress bar.
- move progress bar into bamchunk iterator, unify progress bar.
Commit Statistics
- 17 commits contributed to the release over the course of 13 calendar days.
- 15 days passed between releases.
- 5 commits were understood as conventional.
- 0 issues like '(#ID)' were seen in commit messages
Commit Details
view details
- Uncategorized
- Release fibertools-rs v0.3.1 (
f5cc324) - Update (
9d870a9) - Release fibertools-rs v0.3.1 (
0de730e) - Update (
1e7a6c1) - Release fibertools-rs v0.3.0 (
b6cc95c) - Release fibertools-rs v0.3.0 (
3d3d534) - Release fibertools-rs v0.3.0 (
8262358) - Update center.rs (
90b1917) - Move progress bar into bamchunk iterator, unify progress bar. (
0207066) - Move progress bar into bamchunk iterator, unify progress bar. (
d0a80ac) - Move progress bar into bamchunk iterator, unify progress bar. (
678db90) - Move progress bar into bamchunk iterator, unify progress bar. (
c4c4b02) - Better progress bar for extract. (
b37eb2c) - Fmt (
e50243a) - Fmt (
eccd328) - Fmt (
250f080) - Fmt (
9c10eff)
- Release fibertools-rs v0.3.1 (
0.3.0 (2023-07-29)
Release Notes
Chore
- simplifed center with new api.
- refactor a large part of the code base to reduce redudance. TODO simplify center and basemods with this new api.
- improve docs
- drop darkmode
- fix docs and fetch
- regex update
- readme
- clippy
- hide more deps under features for pyft
- example py-ft
- unify api anming for liftover, optimize for inclusion in pyft
- reduce number of copies for nuc and msp.
- move nuc and msp logic out of extract into ranges struct and simplify. We ran on a whole genome ft extract to confirm results dont change.
- readme
- clippy
- Release bio-io version 0.2.0
- Release bamlift version 0.2.0
Chore
- readme
- readme
- readme
- readme
- readme
- readme
- readme
New Features
- add qual to ft cetner, and clean the ft center code more
- adding ft center to the python module!
- Reorganize pyft api and docs
- adding liftover to pyft
- very large improvment in speed of lifting over ranges, some liftover results differ from before by 1bp but it is rare.
- change the result of liftovers to be an Option.
Commit Statistics
- 70 commits contributed to the release over the course of 7 calendar days.
- 7 days passed between releases.
- 31 commits were understood as conventional.
- 0 issues like '(#ID)' were seen in commit messages
Commit Details
view details
- Uncategorized
- Readme (
d11301f) - Readme (
b356b22) - Readme (
fe9dd43) - Readme (
b532eb0) - Readme (
2c4b6ef) - Readme (
ae12da9) - Readme (
9ca181d) - Readme (
5c2d004) - Readme (
f27c56d) - Readme (
67fc6eb) - Release fibertools-rs v0.3.0 (
668ff64) - Release bio-io version 0.2.0 (
6bb4c5c) - Change (
019e9de) - Change (
11c3915) - Change (
20d9aa7) - Change (
de36de7) - Release bamlift version 0.2.0 (
36a975a) - Change (
70c9606) - Change (
49871ce) - Change (
cbf0de8) - Change (
0a0c37b) - Change (
4a5e5c4) - Readme (
99aeada) - Improve fetch error msg (
6332770) - Update so pyft works with options results (
a09faa2) - Update so pyft works with options results (
f225f9d) - Change the result of liftovers to be an Option. (
9d07122) - Docs (
07882ea) - Docs (
776713b) - Change (
ad0340e) - Readme (
6595c36) - Add qual to ft cetner, and clean the ft center code more (
b9f4950) - Docs (
1a1f260) - Docs (
2ab1645) - Simplifed center with new api. (
6fe2beb) - Refactor a large part of the code base to reduce redudance. TODO simplify center and basemods with this new api. (
df3ffba) - Improve docs (
96b4fc0) - Adding ft center to the python module! (
96f251b) - Drop darkmode (
1436dbf) - Fix docs and fetch (
04b1e9b) - Clean (
1d5872d) - Reorganize pyft api and docs (
9da4fa3) - Check for sorted (
8fbdc7c) - Check for sorted (
624dd33) - Block index (
ab59d1d) - Regex update (
f73a36a) - Readme ([
8bf2168](https://github.com...
- Readme (
0.2.6 (2023-07-21)
Release Notes
Bug Fixes
- speed options
- rework fiberdata to consume bam record to avoid extra copy
New Features
- add cpg to python modele and make easier access in the rust basemod api
- I have a minimal working python package yay!
Chore
- rename iterator
- python docs
- python docs
- readme
- add to changelog
Commit Statistics
- 78 commits contributed to the release over the course of 2 calendar days.
- 2 days passed between releases.
- 48 commits were understood as conventional.
- 0 issues like '(#ID)' were seen in commit messages
Commit Details
view details
- Uncategorized
- Release fibertools-rs v0.2.6 (
e973f17) - Release fibertools-rs v0.2.6 (
ba8df9b) - Release fibertools-rs v0.2.6 (
1b5dcfa) - Release fibertools-rs v0.2.6 (
5aa1908) - Release fibertools-rs v0.2.6 (
656682a) - Release fibertools-rs v0.2.6 (
2d2f0f9) - Release fibertools-rs v0.2.6 (
b80d856) - Release fibertools-rs v0.2.6 (
14562fd) - Try again (
4aa06eb) - Release fibertools-rs v0.2.6 (
e247747) - Try again (
09da733) - Release fibertools-rs v0.2.6 (
9b1c3f2) - Release fibertools-rs v0.2.6 (
0c525b5) - Py-ft release (
4de2b11) - Py-ft release (
b909bc8) - Larger chunks not worth (
911bf40) - Larger chunks (
171cf51) - Speed options (
9fe3676) - Rework fiberdata to consume bam record to avoid extra copy (
066ca94) - Clippy (
ecd0a61) - Update rusthtslib version (
d262afa) - Move bam tags into bio_io (
abcbcda) - Add logging and iterator and aligned blocks (
7671998) - Rename iterator (
66b98f9) - Rename iterator (
9e8cda2) - Rename iterator (
23e6b12) - Rename iterator (
b03df77) - Docs (
6e8cd6f) - Docs (
79ca845) - Add cpg to python modele and make easier access in the rust basemod api (
3ea32b0) - Docs (
41bcd27) - Docs (
66338fd) - Docs (
6f910c5) - Docs (
85d471d) - Docs (
c5eb60a) - Docs (
5bd6803) - Docs (
a59f41d) - Docs (
7a633d7) - Docs (
8d16055) - Docs (
467072a) - Docs (
09994bd) - Docs (
8ea9fb1) - Docs (
82399e6) - Docs (
fd115b7) - Docs (
1d25caf) - Docs (
e73e00c) - Docs (
a3f29cd) - Docs (
e85afd9) - Docs (
580968a) - Docs (
6b1e714) - Docs ([`c8502a...
- Release fibertools-rs v0.2.6 (
v0.2.5
chore: Release fibertools-rs version 0.2.5
v0.2.4
chore: Release fibertools-rs version 0.2.4
v0.2.3
chore: Release fibertools-rs version 0.2.3
v0.1.4
chore: Release fibertools-rs version 0.1.4
v0.1.3
chore: Release fibertools-rs version 0.1.3