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General improvements to the code #3

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jonbra opened this issue Feb 7, 2024 · 0 comments

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jonbra commented Feb 7, 2024 •

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Possible improvements:

Better documentation
Make sure that all samples and runs are included (i.e. that the Nextclade mutation reports are found for all samples).
Improve the way the various mutation classes are summarized.
Better documentation to designate between successful analysis without any resistance findings, or if the sample has not been analysed.
Maybe create separate tasks for these things.

jonbra changed the title ~~Improve the code~~ General improvements to the code

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