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Speedup math operations #4

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fungs opened this issue Jul 19, 2017 · 1 comment

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fungs commented Jul 19, 2017

The code is currently slow, we can do much better using

removing assertions in non-debug mode
scaling data at the beginning to avoid likelihood calculations
speeding up vector arithmetics with more advanced python packages/methods
avoiding the time for parsing the data over and over again

fungs added the enhancement label

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fungs commented Apr 18, 2018

Considerations:

numexpr, theano or numba for faster math
Cython
numpy.ascontiguousarray, numpy.vdot, numpy.memmap

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