diff --git a/README.md b/README.md index 38f14ca..b5076d1 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ -`DECIPHER` aims to learn cells’ disentangled embeddings from intracellular state and extracellular context views based on spatial omics data. +`DECIPHER` aims to learn cells’ disentangled intracellular molecular identity embedding and extracellular spatial context embedding from spatial omics data. ![DECIPHER](./docs/_static/Model.png) @@ -73,7 +73,7 @@ sc.pl.umap(adata, color=['region']) ``` ### Tutorials - +> Please check [**documentation**](https://cell-decipher.readthedocs.io/en/latest) for all tutorials. | Name | Description | Colab | | --------------------------------------- | ------------------------------------------------------------ | ------------------------------------------------------------ | diff --git a/docs/_static/Model.png b/docs/_static/Model.png index 1e32cc5..81a21b1 100644 Binary files a/docs/_static/Model.png and b/docs/_static/Model.png differ diff --git a/docs/requirements.txt b/docs/requirements.txt index bd50229..d545e62 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,9 +1,9 @@ -sphinx == 5.3.0 +sphinx == 6.2.1 sphinx-autodoc-typehints sphinx-copybutton +sphinx_gallery >= 0.8.2, < 0.11 sphinx-intl nbsphinx sphinx-rtd-theme -sphinx_gallery >= 0.8.2, < 0.11 jinja2 myst-parser