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I run the check_install.bash script and I am getting the following error:
Checking GeneMark-ES installation
Checking Perl setup
All required Perl modules were found
Checking GeneMark.hmm setup
File gmhmme3 is not an executable or does not exist
The problem is that gmhmme3 does exist and it is executable.
-rwxrwx---+ 1 user domain users 1742336 Oct 23 04:18 gmhmme3
Hi,
I have the following error when running GeneMark-ES/ET/EP ver 4.71_lic. Any help
error on call: /camp/lab/cardoso-moreiam/home/users/safiand/bin/gmes_linux_64_mod/parse_ET.pl --section EP_C --cfg /camp/lab/cardoso-moreiam/home/users/safiand/genome_annotation/turneri/turneri_braker1_2_tsebr/GeneMarkEP/run.cfg --v
finished Wed Dec 21 21:19:50 GMT 2022
The .log file indicate:
/camp/lab/cardoso-moreiam/home/users/safiand/bin/gmes_linux_64_mod/gmes_petap.pl : [Wed Dec 21 21:19:50 2022] /camp/lab/cardoso-moreiam/home/users/safiand/bin/gmes_linux_64_mod/parse_ET.pl --section EP_C --cfg /camp/lab/cardoso-moreiam/home/users/safiand/genome_annotation/turneri/turneri_braker1_2_tsebr/GeneMarkEP/run.cfg --v
/camp/lab/cardoso-moreiam/home/users/safiand/bin/gmes_linux_64_mod/gmes_petap.pl : [Wed Dec 21 21:19:50 2022] error
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