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Convert perl #8

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genericdata opened this issue Aug 11, 2023 · 0 comments · May be fixed by #10
Open

Convert perl #8

genericdata opened this issue Aug 11, 2023 · 0 comments · May be fixed by #10
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GENEFLOW/bin/merge.sh

Line 46 in a343578

id=$(perl -ne 'print $1 if /_(n0[1-4]_.+)\.fastq\.gz/' <<< "${file}")

We only have perl once in the entire project. Best to move to a more common tool like like bash or awk.
@genericdata genericdata self-assigned this Aug 16, 2023
@genericdata genericdata linked a pull request Jan 23, 2024 that will close this issue
Convert perl regex to bash #10
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Convert perl regex to bash gencorefacility/GENEFLOW
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