From 360450791af0ab0ded106530f5b4f66f192dea3a Mon Sep 17 00:00:00 2001 From: kojix2 <2xijok@gmail.com> Date: Thu, 2 Nov 2023 14:28:39 +0900 Subject: [PATCH] Fix typo in README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b1b48d15..1da0ff13 100644 --- a/README.md +++ b/README.md @@ -51,7 +51,7 @@ docker run -v ${PWD}:/wd genomenexus/gn-annotation-pipeline:master --filename /w #### View logging file To enable logging in the Genome Nexus Annotation Pipeline and access the log file, you need to mount your local path to view the log file locally. By default, the log file is stored at `/genome-nexus-annotation-pipeline/logs/genome-nexus-annotation-pipeline.log`. Use the following command as an example: ``` -docker run -v ${PWD}:/wd -v ${PWD}/logs:/genome-nexus-annotation-pipeline/logs gn-annotation-pipeline:master --filename /wd/input.txt --output-filename /wd/output.txt +docker run -v ${PWD}:/wd -v ${PWD}/logs:/genome-nexus-annotation-pipeline/logs genomenexus/gn-annotation-pipeline:master --filename /wd/input.txt --output-filename /wd/output.txt ``` - `-v ${PWD}/logs:/genome-nexus-annotation-pipeline/logs` flag mounts the logs directory inside the current working directory to the corresponding directory inside the Docker container. - Other flags are the same as above