setup.py

#!/usr/bin/env python
# -*- coding: utf-8 -*-
import io
import os
import re

from setuptools import setup, find_packages


PKG_NAME = "bioframe"
README_PATH = "README.md"
INSTALL_DEPS_PATH = "requirements.txt"
CLASSIFIERS = [
    "Development Status :: 4 - Beta",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
]


def _read(*parts, **kwargs):
    filepath = os.path.join(os.path.dirname(__file__), *parts)
    encoding = kwargs.pop("encoding", "utf-8")
    with io.open(filepath, encoding=encoding) as fh:
        text = fh.read()
    return text


def get_version(pkg_name):
    version = re.search(
        r'^__version__\s*=\s*[\'"]([^\'"]*)[\'"]',
        _read("{}/_version.py".format(pkg_name)),
        re.MULTILINE,
    ).group(1)
    return version


def get_long_description(readme_path):
    return _read(readme_path)


def get_requirements(path):
    content = _read(path)
    return [req for req in content.split("\n") if req != "" and not req.startswith("#")]


# extras_require = {
#     'docs': [
#         'Sphinx>=1.1',
#         'numpydoc>=0.5'
#     ]
# }


setup(
    name=PKG_NAME,
    author="Open2C",
    author_email="nezar@mit.edu",
    version=get_version(PKG_NAME),
    license="MIT",
    description="Pandas utilities for tab-delimited and other genomic files",
    long_description=get_long_description(README_PATH),
    long_description_content_type="text/markdown",
    url="https://github.com/open2c/bioframe",
    keywords=[
        "pandas",
        "dataframe",
        "genomics",
        "epigenomics",
        "bioinformatics",
        "intervals",
    ],
    packages=find_packages(),
    package_data={"bioframe": ["io/data/*"]},
    zip_safe=False,
    classifiers=CLASSIFIERS,
    python_requires=">=3.7",
    install_requires=get_requirements(INSTALL_DEPS_PATH),
    tests_require=["pytest"],
    setup_requires=["wheel"],
    # extras_require=extras_require,
    # entry_points={
    # }
)