From 28a67c3684f5c7ce3beff69727a9902820978198 Mon Sep 17 00:00:00 2001 From: Rob Gifford Date: Sat, 30 Sep 2023 08:29:35 +0100 Subject: [PATCH] update --- .../ehbv-herpeto.10-EleCoq.fna | 1 + tabular/eve/ehbv-refseqs-side-data.tsv | 1 + tabular/eve/ehbv-refseqs-side-data.xlsx | Bin 19722 -> 19669 bytes 3 files changed, 2 insertions(+) create mode 100644 sources/fasta-refseqs-ehbv/ehbv-herpeto.10-EleCoq.fna diff --git a/sources/fasta-refseqs-ehbv/ehbv-herpeto.10-EleCoq.fna b/sources/fasta-refseqs-ehbv/ehbv-herpeto.10-EleCoq.fna new file mode 100644 index 00000000..a5730ba1 --- /dev/null +++ b/sources/fasta-refseqs-ehbv/ehbv-herpeto.10-EleCoq.fna @@ -0,0 +1 @@ +>ehbv-herpeto.10-EleCoq ATGGATCCTATCGTCAGATATGCTTTGTCTAGTATTGACAGTTTAGGTGATGAGGATTTTCCAGCTACTGAACAAATTTT GTTAGATTCTAGAGATGCTGCTGCAAACTATTGGGATGACATTGAAAATAAAAGTCACCATGTTTCAGCTTCTAGATTTC TTTTTGACTCAGTTATTCGCCACCGTTCCTTACCTGAAGTATTCTCACATGTACACACTTCATTGAGAGATTATTGGCTT TCGAGTGTTGGGTTTACCTCTATAACCCAATACCCAAAAGCTTTTGAGTTGGACCGGGTTCCCTCTCGCTCAGAGGACCG TACCCCTCAAGTAAATATACTTGAGGCTATAAACGTAGCCGAACCTAGCCAACTCCCTGAGCCTGGGTTATGGAGAGCTG CTGAAACTTGTAGACTCGCGGGTGAGTACATGAAAAGGATTGAGCGATCATTGGCACGCTATTTGTGGTATCACGTTGAT TGTATCACATTGGGACAACCAGCAGTAGATTCTTTTATTGCTAAATATCGCAAATGGAAATCTACTCCTCCCCACATGAG AGGTACTAATGCTCCCTCAATTGAACAAGTTACTCAGCCCAAGAGAGTCAGGCCCAGGTCAGATACTCCAGGACCTAGAA GAACTAACAGCAGGAACAGATCCACTGGTAGGCAGTTACAATACAAGAAAACCGTTAGAAGGTTTGCTTCCCCCTCTGGG AGCCCCAGAGTTCAAAGGGACAGAGACACGGCCAGGTCTCCCTCCCCCAGGGGAAGGTACAGTGCATGAACTTAGAGACT TAGAGACCTCAAGGGGTTATATATTAACCCCACTTCCCCGTTTAATAAAGACTGGAAAATTCCCGACTTTGCAGGGGTAG AGGTAAAAAATAGTATAAAAACTGAAATCCCAGACAGACGATGGCAGTACATATTCCCTGTTAGATTCTGGCCAAAAGAG GTTGCTTATCGTCCAAAAGCTTACGGGGTTTCAGAAAAATATCCTGAGTTCATAACTGAGCATAAAAAGATAGTTTCTCA ATACTTGACGAGGCTGTTTGACGCTGGGATCCTTTACAAGAGAGTCTCCAGACATGTACTTGCTTTTAGGGGTAATCCTT ATCCTTGGGAATGTAATTACTTGCTCCCCGCATACATCAATAGACAAGAGGGACGCAGATCTCGAGTATGCTGCAGAAGG AGCAATTCTCCTGTTAAAAAGGTTCTTGAATCTAGTCAGTCCTCAGGAGACAAAGGCGCTAAACCAGATGTCCCCCCAAG AATTCATCGATCTGATAAAAGACCCCTTGACTGCATCACAGTTTATAGAGACACTTCCAAAGATATCTCTATGGAGACTC AACAAGGAAAGCAACCTGAGAAAAAGAAATATTTCTCAGTTAATGGAAGACTTTTTCAAAGACCTGGAATACATGCTAGA TATAGCATGGGAAATAGAAAGATTGACCAATCTCTCCAATCCAAACTTCGACCCGGTGATCATTCCAAAAATCATTATCC CCAAAAGGCCCCGGGACGCTATACCAGCACACTTTCTATTGGGCCTTCAAGGGGAGGAGTGGTCACTCCCACAAGAATTC ATAAAGATGCGAAGGGACATCACCAGAGAAAGAGAGATTCCTCGACGCAAGCCATCTCCAACTGGACTAATCAGGCGCAC AAAGCCTACCAAGCCTTCAGTTCCGAATTTCATCCCGACCACACCAACACCAACCCGACCGGTGAGAGAGACTCCAGAAA AAATGGAGTGGGTTACGAAAATACTATCTACTCCAGCACTGTTGTTCGCTCTGGTGTGTCTGGTCGTGTAGTTCTGGTCA ACAAGAATTCTACAGATGCTTCGAAGGCTAGACTTGTGGTGGATTTCTCTCAATTTTCCAGGGGAAGAAATAAAATGTCC TTTCCAAAATATTTCTCCCCAAACACCGAATCATTGTCCAGGATCCTGCCCAATACAATGTGGAGGATATCGTTGGACTT GGCTGAGGCTTTCTATCATCTGCCTTATCATCCCGCTAGTAGTGTGTGGCTATCTATTTCTGATGGAGAAGATACCTACC TATTCAGGAGGGTCGCTATGGGGCTTGGTCTCAGCCCTTGGAACCTCACTCTCTTCACTTCCATCATTGCTGAAAGGATC AGAGTATACTTCAATGTTCACTGCTTTGCTTATATGGATGATTTCATCTTATCTCACAATGACCCCCAATGGAAGGTGAT GCAGAGATTTTGTGGACACTTTAATCAATTCGCCGATTTCACGCTGTACCGATCAACAGTTTTGAAGCCCATC \ No newline at end of file diff --git a/tabular/eve/ehbv-refseqs-side-data.tsv b/tabular/eve/ehbv-refseqs-side-data.tsv index 09045c46..b7bc2f5d 100644 --- a/tabular/eve/ehbv-refseqs-side-data.tsv +++ b/tabular/eve/ehbv-refseqs-side-data.tsv @@ -55,6 +55,7 @@ ehbv-herpeto.5-testudines herpeto.5-testudines Herpetohepadnavirus Endogenous he ehbv-herpeto.6-varanus herpeto.6-varanus Herpetohepadnavirus Endogenous herpetohepadnavirus 6 ehbv-herpeto.6-varanus 6 fragment nd nd WSCD2 (intronic) WSCD2 (intronic) Hepadnaviridae Species Varanus N/A herpeto-type-2 ehbv-herpeto.7-serpentes herpeto.7-serpentes Herpetohepadnavirus Endogenous herpetohepadnavirus 9 ehbv-herpeto.7-serpentes 9 complete nd nd ATP2A3 ZZEF1 Hepadnaviridae Suborder Serpentes N/A herpeto-type-3-serpentes ehbv-herpeto.8-serpentes herpeto.8-serpentes Herpetohepadnavirus Endogenous herpetohepadnavirus 8 ehbv-herpeto.8-serpentes 8 complete nd nd OBI1 RBM26 Hepadnaviridae Suborder Serpentes N/A herpeto-type-3-serpentes +ehbv-herpeto.10-EleCoq herpeto.10-EleCoq Herpetohepadnavirus Endogenous herpetohepadnavirus 10 ehbv-herpeto.10-EleCoq 10 fragment nd nd nk nk Hepadnaviridae Species Eleutherodactylus coqui herpeto.10-EleCoq ehbv-meta.1-sauria meta.1-sauria Metahepadnavirus Endogenous metahepadnavirus 1 ehbv-meta.1-sauria 1 complete Core 1 KLF8 ENSACUG00000005807 Hepadnaviridae Clade Sauropsida N/A meta-type-5 ehbv-meta.2-varanus meta.2-varanus Metahepadnavirus Endogenous metahepadnavirus 2 ehbv-meta.2-varanus 2 fragment nd nd NPVF NFE2L3 Hepadnaviridae Species Varanus N/A meta-type-6 ehbv-meta.3-paroedura meta.3-paroedura Metahepadnavirus Endogenous metahepadnavirus 3 ehbv-meta.3-paroedura 3 fragment nd nd NK NK Hepadnaviridae Species Paroedura N/A ND diff --git a/tabular/eve/ehbv-refseqs-side-data.xlsx b/tabular/eve/ehbv-refseqs-side-data.xlsx index 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