VariantDiscovery.inputs.json

{
  "VariantDiscovery_WF.genome_ref": "RefSeq.fa",
  "VariantDiscovery_WF.listChromosomeFile": "RefSeq.chromosomes.list",
  "VariantDiscovery_WF.listChromosomeLengthFile": "RefSeq.chromosomes.length",
  "VariantDiscovery_WF.listScaffoldFile": "RefSeq.scaffolds.list",
  "VariantDiscovery_WF.listScaffoldLengthFile": "RefSeq.scaffolds.length",
  "VariantDiscovery_WF.withScaffolds": "false",
  "VariantDiscovery_WF.inputSamplesFile": "samples_names_bam.txt",
  "VariantDiscovery_WF.workDir": "workingDir",
  "VariantDiscovery_WF.log": "workingDir/log",
  "VariantDiscovery_WF.tmp": "workingDir/tmp",
  "VariantDiscovery_WF.basename": "basename",
  "VariantDiscovery_WF.threads": "40",
  "VariantDiscovery_WF.java": "/bin/java",
  "VariantDiscovery_WF.picard": "/bin/picard.jar",
  "VariantDiscovery_WF.gatk": "/bin/gatk",
  "VariantDiscovery_WF.tabix": "/bin/tabix"
}