diff --git a/CHANGELOG.md b/CHANGELOG.md
index d3021ebe446b..88fd42d9e7e8 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -66,6 +66,7 @@ Main (unreleased)
 
 - Fix an issue where JSON string array elements were not parsed correctly in `loki.source.cloudflare`. (@thampiotr)
 
+- Fix an issue where nested import.git config blocks could conflict if they had the same labels. (@wildum)
 
 - Fix SSRF vulnerability in `faro.receiver` by disabling source map download. (@hainenber)
 
diff --git a/internal/flow/internal/controller/node_config_import.go b/internal/flow/internal/controller/node_config_import.go
index e87a1223cc5b..35f7dd409533 100644
--- a/internal/flow/internal/controller/node_config_import.go
+++ b/internal/flow/internal/controller/node_config_import.go
@@ -286,6 +286,8 @@ func (cn *ImportConfigNode) processImportBlock(stmt *ast.BlockStmt, fullName str
 	childGlobals := cn.globals
 	// Children have a special OnBlockNodeUpdate function which notifies the parent when its content changes.
 	childGlobals.OnBlockNodeUpdate = cn.onChildrenContentUpdate
+	// Children data paths are nested inside their parents to avoid collisions.
+	childGlobals.DataPath = filepath.Join(childGlobals.DataPath, cn.globalID)
 	cn.importConfigNodesChildren[stmt.Label] = NewImportConfigNode(stmt, childGlobals, sourceType)
 	return nil
 }