diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml
deleted file mode 100644
index 7d0b7de5f8..0000000000
--- a/.github/ISSUE_TEMPLATE/config.yml
+++ /dev/null
@@ -1,8 +0,0 @@
-blank_issues_enabled: true
-contact_links:
- - name: 💬 Start a discussion
- url: https://github.com/greenelab/lab-website-template/discussions
- about: I need help, I have a question, or other discussion.
- - name: 📚 Docs issue
- url: https://github.com/greenelab/lab-website-template-docs/issues
- about: I have a question or issue related to the template documentation.
diff --git a/.github/ISSUE_TEMPLATE/issue.yaml b/.github/ISSUE_TEMPLATE/issue.yaml
deleted file mode 100644
index 4d09efb61a..0000000000
--- a/.github/ISSUE_TEMPLATE/issue.yaml
+++ /dev/null
@@ -1,34 +0,0 @@
-name: 🐞 Create an issue
-description: I think I've discovered a bug, I want to request a feature/change, or other issue.
-
-body:
- - type: checkboxes
- attributes:
- label: Checks
- options:
- - label: I have searched **[the docs](https://greene-lab.gitbook.io/lab-website-template-docs)**, [existing issues](https://github.com/greenelab/lab-website-template/issues), and [existing discussions](https://github.com/greenelab/lab-website-template/discussions) for answers first.
- required: true
-
- - type: input
- id: repo
- attributes:
- label: Link to your website repo
- description: "**Strongly recommended** so we can help troubleshoot your issue."
- placeholder: ex. https://github.com/greenelab/greenelab.com
-
- - type: input
- id: version
- attributes:
- label: Version of Lab Website Template you are using
- description: See your `CITATION.cff` file.
- placeholder: ex. 1.0.0
-
- - type: textarea
- id: description
- attributes:
- label: Description
- description: |
- Describe your issue in as much detail as possible. For example: What happened? What did you expect to happen? How can we reproduce the problem? What browser are you seeing the problem in?
- placeholder: Description
- validations:
- required: true
diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md
index 6aaf76bdc2..00a0e7117c 100644
--- a/.github/pull_request_template.md
+++ b/.github/pull_request_template.md
@@ -1,13 +1,4 @@
-STOP!!!
+This website is based on the Lab Website Template.
+See its documentation for working with this site:
-You are about to open this pull request against THE TEMPLATE ITSELF. You probably meant to open it against your own website repo.
-
----
-
-FOR THE TEMPLATE MAINTAINER(S)
-
-New template version checklist:
-
-- [ ] I have updated CITATION and CHANGELOG as appropriate.
-- [ ] I have updated lab-website-template-docs as appropriate.
-- [ ] I have checked the testbed as appropriate.
+https://greene-lab.gitbook.io/lab-website-template-docs
diff --git a/.github/user_pull_request_template.md b/.github/user_pull_request_template.md
deleted file mode 100644
index 00a0e7117c..0000000000
--- a/.github/user_pull_request_template.md
+++ /dev/null
@@ -1,4 +0,0 @@
-This website is based on the Lab Website Template.
-See its documentation for working with this site:
-
-https://greene-lab.gitbook.io/lab-website-template-docs
diff --git a/.github/workflows/versioning.yaml b/.github/workflows/versioning.yaml
deleted file mode 100644
index cc2655f650..0000000000
--- a/.github/workflows/versioning.yaml
+++ /dev/null
@@ -1,131 +0,0 @@
-name: versioning
-run-name: versioning tasks
-
-on:
- pull_request:
- branches:
- - main
- push:
- branches:
- - main
-
-permissions:
- contents: write
-
-jobs:
- pull-request:
- # only run on template itself, not user instance of template
- if: |
- github.repository == 'greenelab/lab-website-template' &&
- github.event_name == 'pull_request'
- runs-on: ubuntu-latest
- steps:
- # for debugging
- - name: Print contexts
- uses: crazy-max/ghaction-dump-context@v1
-
- - name: Checkout base branch contents
- uses: actions/checkout@v3
- with:
- ref: main
- path: base
-
- - name: Checkout pr branch contents
- uses: actions/checkout@v3
- with:
- path: pr
-
- - name: Install packages
- run: yarn add yaml semver
-
- - name: Check version, date, changelog
- uses: actions/github-script@v6
- with:
- script: |
- const { readFileSync } = require("fs");
- const { lte, valid } = require("semver");
- const { parse } = require("yaml");
-
- // load and parse file contents
- const { version: oldVersion, "date-released": oldDate } = parse(
- readFileSync("base/CITATION.cff").toString()
- );
- const { version: newVersion, "date-released": newDate } = parse(
- readFileSync("pr/CITATION.cff").toString()
- );
- const changelog = readFileSync("pr/CHANGELOG.md")
- .toString()
- .split(/^## /m)
- .map((section) => {
- const [heading, ...body] = section.split("\n");
- return [heading.trim(), body.join("\n").trim()];
- });
-
- // check version
- if (!valid(newVersion)) throw Error("Version not valid");
- if (lte(newVersion, oldVersion)) throw Error("Version not updated");
-
- // check date
- if (new Date(newDate).toISOString().split("T")[0] !== newDate)
- throw Error("Date not valid");
- if (new Date(newDate) <= new Date(oldDate)) throw Error("Date not updated");
-
- // check changelog
- const newSection = changelog.find(
- ([heading, body]) =>
- heading.includes(newVersion) && heading.includes(newDate) && body
- );
- if (!newSection) throw Error("Changelog not updated or not valid");
-
- push:
- # only run on template itself, not user instance of template
- if: |
- github.repository == 'greenelab/lab-website-template' &&
- github.event_name == 'push'
- runs-on: ubuntu-latest
- steps:
- # for debugging
- - name: Print contexts
- uses: crazy-max/ghaction-dump-context@v1
-
- - name: Checkout branch contents
- uses: actions/checkout@v3
-
- - name: Install packages
- run: yarn add yaml semver
-
- - name: Get version and body
- id: version
- uses: actions/github-script@v6
- with:
- script: |
- const { readFileSync } = require("fs");
- const { parse } = require("yaml");
-
- // load and parse file contents
- const { version, "date-released": date } = parse(
- readFileSync("CITATION.cff").toString()
- );
- const changelog = readFileSync("CHANGELOG.md")
- .toString()
- .split(/^## /m)
- .map((section) => {
- const [heading, ...body] = section.split("\n");
- return [heading.trim(), body.join("\n").trim()];
- });
-
- // find changelog body for version
- const [, body = ""] =
- changelog.find(
- ([heading]) => heading.includes(version) && heading.includes(date)
- ) || [];
-
- return { version, body };
-
- - name: Create GitHub release
- uses: ncipollo/release-action@v1
- with:
- commit: ${{ github.ref }}
- tag: v${{ fromJson(steps.version.outputs.result).version }}
- name: v${{ fromJson(steps.version.outputs.result).version }}
- body: ${{ fromJson(steps.version.outputs.result).body }}
diff --git a/CHANGELOG.md b/CHANGELOG.md
deleted file mode 100644
index 4b25f89cd5..0000000000
--- a/CHANGELOG.md
+++ /dev/null
@@ -1,126 +0,0 @@
-# Changelog
-
-Reference: common-changelog.org
-
-## 1.1.6 - 2023-10-06
-
-- Use latest minor versions of Python packages in auto-cite script.
-
-## 1.1.5 - 2023-05-19
-
-### Changes
-
-- Fix ORCID plugin bug and other cite process tweaks.
-
-## 1.1.4 - 2023-04-28
-
-### Changed
-
-- Fix ORCID plugin and other cite process bugs.
-
-## 1.1.3 - 2023-04-20
-
-### Changed
-
-- Fix first-time-setup mv bug.
-- Fix citation, float, and portrait component CSS.
-- Filter and trim citation info fields.
-
-## 1.1.2 - 2023-04-11
-
-### Changed
-
-- Fix first-time-setup rm bug.
-
-## 1.1.1 - 2023-04-06
-
-### Changed
-
-- Change member profile page from col layout to float.
-- Fix first time setup. Preserve config formatting and comments.
-- Improve Docker cite process behavior.
-- Fix post excerpt component start/end markers and special search attr chars.
-- Fix misc CSS.
-
-### Added
-
-- Add show-title and show-subtitle site config options.
-- Include site subtitle in description meta tag.
-- Add user pull request template.
-- Add title and link fallbacks to citation component.
-
-## 1.1.0 - 2023-03-17
-
-Add alert component, Docker support, accessibility fixes.
-
-### Changed
-
-- Fix Lighthouse accessibility issues.
-- De-href components when link isn't provided (no hand cursor icon on hover or nav on click).
-- In search script, limit highlights by total count instead of char length.
-- Grid and link style tweaks.
-- Take ORCID icon from Font Awesome.
-- Misc bug fixes in tags script, float component.
-
-### Added
-
-- Add Docker configuration and scripts for local previewing.
-- Add alert component and types.
-- Role icon in portrait component hoisted to top left.
-
-## 1.0.0 - 2023-02-28
-
-First official release.
-
-High-level comparison with pre-releases:
-
-- Simpler configuration.
-- More automation, less setup.
-- More customization and flexibility.
-- Redesigned components.
-- New docs.
-- Complete rewrite.
-- Culmination of years of feedback.
-
-### Changed
-
-- Template is no longer limited to GitHub Pages white-listed Jekyll plugins. Any plugins possible.
-- Pull request previews happen right within GitHub instead of needing Netlify.
-- Better versioning. `CITATION.cff` file now source of truth for version, and tags/releases enforced.
-- Citation-related files in `/_data` must now be named prefixed with the cite plugin they are to be run with, e.g. `sources-2020.yaml` or `orcid-students.yaml`.
-- Folder renames for clarity and for better separation of template and user content: `/auto-cite` → `/_cite`, `/css` → `/_styles`, `/js` → `/_scripts`.
-- Rename "Tools" page to "Projects" to be more clear and general purpose.
-- Rename `extra-links` to `buttons` in `sources.yaml` files.
-- Rename `theme.scss` to `-theme.scss`.
-- Rename/repurpose components: link → button, two-col → cols, gallery → grid.
-- Combine "link" and "role" data lists into single `types.yaml` map.
-- Redesign components, change parameters and behavior.
-- Update Font Awesome icon names from v5 to v6.
-- Change placeholder text, images, and other images.
-- Use CSS variables instead of Sass variables.
-- Simplify caching method in cite process.
-- Simplify Liquid code by including custom Ruby plugins.
-- Simplify styles and scripts.
-
-### Added
-
-- New docs at greene-lab.gitbook.io/lab-website-template-docs.
-- Add automations for first time setup and URL change.
-- Write PubMed and Google Scholar automatic citation plugins.
-- Automatic citations through GitHub Actions should now work from (most) forks.
-- Add optional description and type params for citations.
-- Add periodic cite process run that opens a pull request.
-- List component filters can now accept arbitrary regex.
-- Add light/dark mode toggle.
-- Pre-install selection of useful Jekyll plugins, namely Jekyll Spaceship.
-- Add author portrait and updated date for blog posts.
-- Add richer metadata for SEO.
-- Google Fonts link determined automatically from theme file.
-
-### Removed
-
-- Remove options from `_config.yaml` to simplify configuration: `baseurl`, `auto-cite`, `logo`.
-- Remove `/favicons` folder, hardcode files for logo, icon, and share in `/images`.
-- Remove `palettes.scss` and `mixins.scss`.
-- Remove banner component (same thing can be achieved with full width section and figure components).
-- Remove role component. Combine with portrait component.
diff --git a/README.md b/README.md
index 29bf9a24af..2748326092 100644
--- a/README.md
+++ b/README.md
@@ -1,30 +1,7 @@
-
Lab Website Template
-
-
-
-Lab Website Template (LWT) is an easy-to-use, flexible website template for labs.
-Spend less time worrying about managing a website and citations, and more time running your lab.
+# emad-askari's Website
-👇👇 **Get Started** 👇👇
+Visit **[emad-askari.github.io/my-website-temp](https://emad-askari.github.io/my-website-temp)** 🚀
-[**Documentation**](https://greene-lab.gitbook.io/lab-website-template-docs)
+_Built with [Lab Website Template](https://greene-lab.gitbook.io/lab-website-template-docs)_
-## Key Features
-
-- 🤖 Based on Git, GitHub, and Jekyll.
-- 📜 Automatically generated citations from simple identifiers (DOI, PubMed, ORCID, and many more) using Manubot. E.g. `doi:1234/5678` -> `title`, `authors`, `publisher`, `date`, etc.
-- 🧱 A comprehensive and flexible suite of pre-made components (building blocks) for structuring and styling your website:
- - Formatted tables, code blocks, figures, and other basic elements.
- - Citations with thumbnails and other rich details.
- - List large sets of data with flexible filters and components.
- - ...many more
-- 👁️ Automatic pull request previews.
-- ⚙️ Easy and automated configuration.
-- 👥 Team member pages with bios, roles, and social media links.
-- 🖋️ Blog posts with tags and rich content.
-- 📱 Works and looks good on desktop and mobile.
-- 🤝 Great documentation and support (if we do say so ourselves).
-- ... and much more!
-
-
diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db
index 4bbcc12b9f..2d39669986 100644
Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ
diff --git a/_config.yaml b/_config.yaml
index 050986828a..f4b1ab5e8b 100644
--- a/_config.yaml
+++ b/_config.yaml
@@ -1,18 +1,15 @@
# site properties and page defaults
-title: Lab Website Template
-subtitle: by the Greene Lab
-description: An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more.
+title: BSSA lab
+subtitle:
+description: This is the discription of my website.
header: images/background.jpg
footer: images/background.jpg
# site social media and other links
links:
- email: contact@your-lab.com
- orcid: 0000-0001-8713-9213
- google-scholar: ETJoidYAAAAJ
- github: your-lab
- twitter: YourLabHandle
- youtube: YourLabChannel
+ email: emad.askarinejad@gmail.com
+ google-scholar: https://scholar.google.com/citations?user=qUZIvvwAAAAJ&hl=en
+ github: emad-askari
### jekyll settings
diff --git a/_data/citations.yaml b/_data/citations.yaml
index 0cc985a539..db4e4b0036 100644
--- a/_data/citations.yaml
+++ b/_data/citations.yaml
@@ -1,5 +1,75 @@
# DO NOT EDIT, GENERATED AUTOMATICALLY
+- id: doi:10.1093/nar/gkad1082
+ title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\
+ \ genes\_and diseases across species"
+ authors:
+ - Tim E Putman
+ - Kevin Schaper
+ - Nicolas Matentzoglu
+ - "Vincent\_P Rubinetti"
+ - "Faisal\_S Alquaddoomi"
+ - Corey Cox
+ - J Harry Caufield
+ - Glass Elsarboukh
+ - Sarah Gehrke
+ - Harshad Hegde
+ - "Justin\_T Reese"
+ - Ian Braun
+ - "Richard\_M Bruskiewich"
+ - Luca Cappelletti
+ - Seth Carbon
+ - "Anita\_R Caron"
+ - "Lauren\_E Chan"
+ - "Christopher\_G Chute"
+ - "Katherina\_G Cortes"
+ - "Vin\xEDcius De\_Souza"
+ - Tommaso Fontana
+ - "Nomi\_L Harris"
+ - "Emily\_L Hartley"
+ - Eric Hurwitz
+ - "Julius\_O B Jacobsen"
+ - Madan Krishnamurthy
+ - "Bryan\_J Laraway"
+ - "James\_A McLaughlin"
+ - "Julie\_A McMurry"
+ - "Sierra\_A T Moxon"
+ - "Kathleen\_R Mullen"
+ - "Shawn\_T O\u2019Neil"
+ - "Kent\_A Shefchek"
+ - Ray Stefancsik
+ - Sabrina Toro
+ - "Nicole\_A Vasilevsky"
+ - "Ramona\_L Walls"
+ - "Patricia\_L Whetzel"
+ - David Osumi-Sutherland
+ - Damian Smedley
+ - "Peter\_N Robinson"
+ - "Christopher\_J Mungall"
+ - "Melissa\_A Haendel"
+ - "Monica\_C Munoz-Torres"
+ publisher: Nucleic Acids Research
+ date: '2023-11-24'
+ link: https://doi.org/gs6kmr
+ orcid: 0000-0002-4655-3773
+ plugin: orcid.py
+ file: orcid.yaml
+- id: doi:10.1101/2023.10.11.560955
+ title: Integration of 168,000 samples reveals global patterns of the human gut microbiome
+ authors:
+ - Richard J. Abdill
+ - Samantha P. Graham
+ - Vincent Rubinetti
+ - Frank W. Albert
+ - Casey S. Greene
+ - Sean Davis
+ - Ran Blekhman
+ publisher: Cold Spring Harbor Laboratory
+ date: '2023-10-11'
+ link: https://doi.org/gsvf5z
+ orcid: 0000-0002-4655-3773
+ plugin: orcid.py
+ file: orcid.yaml
- id: doi:10.1093/nar/gkad289
title: 'MyGeneset.info: an interactive and programmatic platform for community-curated
and user-created collections of genes'
@@ -64,6 +134,28 @@
orcid: 0000-0002-4655-3773
plugin: orcid.py
file: orcid.yaml
+- id: doi:10.1101/2022.02.18.461833
+ title: 'MolEvolvR: A web-app for characterizing proteins using molecular evolution
+ and phylogeny'
+ authors:
+ - Jacob D Krol
+ - Joseph T Burke
+ - Samuel Z Chen
+ - Lo Sosinski
+ - Faisal S Alquaddoomi
+ - Evan P Brenner
+ - Ethan P Wolfe
+ - Vince P Rubinetti
+ - Shaddai Amolitos
+ - Kellen M Reason
+ - John B Johnston
+ - Janani Ravi
+ publisher: Cold Spring Harbor Laboratory
+ date: '2022-02-22'
+ link: https://doi.org/gstx7j
+ orcid: 0000-0002-4655-3773
+ plugin: orcid.py
+ file: orcid.yaml
- id: doi:10.1186/s13059-020-02021-3
title: Compressing gene expression data using multiple latent space dimensionalities
learns complementary biological representations
diff --git a/_members/emad-askarinejad.md b/_members/emad-askarinejad.md
new file mode 100644
index 0000000000..7b890c7552
--- /dev/null
+++ b/_members/emad-askarinejad.md
@@ -0,0 +1,14 @@
+---
+name: emad askarinejad
+image: Team/emad/IMG_0792.jpg
+role: phd candidate
+aliases:
+ - S.Emad Asakrinejad
+ # - J Smith
+links:
+ Google Scholar: https://scholar.google.com/citations?user=qUZIvvwAAAAJ&hl=en
+ LinkedIn: https://www.linkedin.com/in/emad-askari/
+ # orcid: 0000-0001-8713-9213
+---
+
+Discription of Emad's projects (1st type)
\ No newline at end of file
diff --git a/_members/emad-askarinejad2.md b/_members/emad-askarinejad2.md
new file mode 100644
index 0000000000..39bbbdf5c9
--- /dev/null
+++ b/_members/emad-askarinejad2.md
@@ -0,0 +1,14 @@
+---
+name: emad askarinejad2
+image: Team/emad/IMG_0792.jpg
+role: phd candidate 2
+aliases:
+ - S.Emad Asakri2
+ # - J Smith
+links:
+ Google Scholar: https://scholar.google.com/citations?user=qUZIvvwAAAAJ&hl=en
+ LinkedIn: https://www.linkedin.com/in/emad-askari/
+ # orcid: 0000-0001-8713-9213
+---
+
+Discription of Emad2's projects (1st type)
\ No newline at end of file
diff --git a/_members/emad-askarinejad3.md b/_members/emad-askarinejad3.md
new file mode 100644
index 0000000000..af5554841b
--- /dev/null
+++ b/_members/emad-askarinejad3.md
@@ -0,0 +1,14 @@
+---
+name: emad askarinejad 3
+image: Team/emad/IMG_0792.jpg
+role: phd candidate
+aliases:
+ - S.Emad Asakri 3
+ # - J Smith
+links:
+ Google Scholar: https://scholar.google.com/citations?user=qUZIvvwAAAAJ&hl=en
+ LinkedIn: https://www.linkedin.com/in/emad-askari/
+ # orcid: 0000-0001-8713-9213
+---
+
+Discription of Emad3's projects
\ No newline at end of file
diff --git a/_members/jane-smith.md b/_members/jane-smith.md
deleted file mode 100644
index f4cae89631..0000000000
--- a/_members/jane-smith.md
+++ /dev/null
@@ -1,19 +0,0 @@
----
-name: Jane Smith
-image: images/photo.jpg
-role: pi
-aliases:
- - J. Smith
- - J Smith
-links:
- home-page: https://janesmith.com
- orcid: 0000-0001-8713-9213
----
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-Faucibus purus in massa tempor nec feugiat nisl pretium fusce.
-Elit at imperdiet dui accumsan.
-Duis tristique sollicitudin nibh sit amet commodo nulla facilisi.
-Vitae elementum curabitur vitae nunc sed velit dignissim sodales.
-Lacinia at quis risus sed vulputate odio ut.
-Magna eget est lorem ipsum.
diff --git a/_members/john-doe.md b/_members/john-doe.md
deleted file mode 100644
index 0e441c6d9f..0000000000
--- a/_members/john-doe.md
+++ /dev/null
@@ -1,10 +0,0 @@
----
-name: John Doe
-image: images/photo.jpg
-role: phd
-group: alum
-links:
- github: john-doe
----
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
diff --git a/_members/john-doe1.md b/_members/john-doe1.md
new file mode 100644
index 0000000000..fe2cbe3133
--- /dev/null
+++ b/_members/john-doe1.md
@@ -0,0 +1,10 @@
+---
+name: John Doe1
+image: images/brainImage.jpg
+role: phd candidate
+group: alum
+links:
+ github: john-doe 1
+---
+
+Discription of John Doe1's projects (2nd type)
\ No newline at end of file
diff --git a/_members/john-doe2.md b/_members/john-doe2.md
new file mode 100644
index 0000000000..01e3b71ca0
--- /dev/null
+++ b/_members/john-doe2.md
@@ -0,0 +1,10 @@
+---
+name: John Doe 2
+image: images/brainImage.jpg
+role: phd candidate
+group: alum
+links:
+ github: john-doe2
+---
+
+Discription of John Doe2's projects (2nd type)
\ No newline at end of file
diff --git a/_members/sarah-johnson.md b/_members/sarah-johnson.md
index b0d97b441a..61e413fcdc 100644
--- a/_members/sarah-johnson.md
+++ b/_members/sarah-johnson.md
@@ -1,6 +1,6 @@
---
name: Sarah Johnson
-image: images/photo.jpg
+image: images/brainImage.jpg
description: Lead Programmer
role: programmer
links:
@@ -8,4 +8,4 @@ links:
twitter: sarahjohnson
---
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+Discription of Sarah Johnson's projects (3rd type)
\ No newline at end of file
diff --git a/_members/sarah-johnson3.md b/_members/sarah-johnson3.md
new file mode 100644
index 0000000000..74af870195
--- /dev/null
+++ b/_members/sarah-johnson3.md
@@ -0,0 +1,11 @@
+---
+name: Sarah Johnson 3
+image: images/brainImage.jpg
+description: PhD Candidate
+role: Student
+links:
+ email: sarah.johnson@gmail.com
+ twitter: sarahjohnson 3
+---
+
+Discription of Sarah Johnson3's projects (3rd type)
\ No newline at end of file
diff --git a/blog/index.md b/blog/index.md
deleted file mode 100644
index b86f3598a0..0000000000
--- a/blog/index.md
+++ /dev/null
@@ -1,21 +0,0 @@
----
-title: Blog
-nav:
- order: 4
- tooltip: Musings and miscellany
----
-
-# {% include icon.html icon="fa-solid fa-feather-pointed" %}Blog
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
-
-{% include section.html %}
-
-{% include search-box.html %}
-
-{% include tags.html tags=site.tags %}
-
-{% include search-info.html %}
-
-{% include list.html data="posts" component="post-excerpt" %}
diff --git a/contact/index.md b/contact/index.md
index d9b7e4bcaf..c9e44bd6b2 100644
--- a/contact/index.md
+++ b/contact/index.md
@@ -1,27 +1,25 @@
---
title: Contact
nav:
- order: 5
+ order: 4
tooltip: Email, address, and location
---
# {% include icon.html icon="fa-regular fa-envelope" %}Contact
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor
-incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis
-nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
+A small text for contacts
{%
include button.html
type="email"
- text="jane@smith.com"
- link="jane@smith.com"
+ text="emad.askarinejad@gmail.com"
+ link="emad.askarinejad@gmail.com"
%}
{%
include button.html
type="phone"
- text="(555) 867-5309"
- link="+1-555-867-5309"
+ text="(438) 465-2705"
+ link="+1-438-465-2705"
%}
{%
include button.html
@@ -36,8 +34,8 @@ nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
{%
include figure.html
- image="images/photo.jpg"
- caption="Lorem ipsum"
+ image="images/brainImage.jpg"
+ caption="1st image of contacts"
%}
{% endcapture %}
@@ -46,8 +44,8 @@ nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
{%
include figure.html
- image="images/photo.jpg"
- caption="Lorem ipsum"
+ image="images/brainImage.jpg"
+ caption="2nd image of contacts"
%}
{% endcapture %}
@@ -57,21 +55,15 @@ nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
{% include section.html dark=true %}
{% capture col1 %}
-Lorem ipsum dolor sit amet
-consectetur adipiscing elit
-sed do eiusmod tempor
+1st col end of the page
{% endcapture %}
{% capture col2 %}
-Lorem ipsum dolor sit amet
-consectetur adipiscing elit
-sed do eiusmod tempor
+2nd col end of the page
{% endcapture %}
{% capture col3 %}
-Lorem ipsum dolor sit amet
-consectetur adipiscing elit
-sed do eiusmod tempor
+3rd col end of the page
{% endcapture %}
{% include cols.html col1=col1 col2=col2 col3=col3 %}
diff --git a/images/Research1.jpg b/images/Research1.jpg
new file mode 100644
index 0000000000..6503bbd7fb
Binary files /dev/null and b/images/Research1.jpg differ
diff --git a/images/Research2.jpg b/images/Research2.jpg
new file mode 100644
index 0000000000..ea1e8edaab
Binary files /dev/null and b/images/Research2.jpg differ
diff --git a/images/TeamE1 - Copy.jpg b/images/TeamE1 - Copy.jpg
new file mode 100644
index 0000000000..17be719108
Binary files /dev/null and b/images/TeamE1 - Copy.jpg differ
diff --git a/images/TeamE1.jpg b/images/TeamE1.jpg
new file mode 100644
index 0000000000..17be719108
Binary files /dev/null and b/images/TeamE1.jpg differ
diff --git a/images/TeamE2.jpg b/images/TeamE2.jpg
new file mode 100644
index 0000000000..b4453a9502
Binary files /dev/null and b/images/TeamE2.jpg differ
diff --git a/images/TeamE3.jpg b/images/TeamE3.jpg
new file mode 100644
index 0000000000..ae2f0c0020
Binary files /dev/null and b/images/TeamE3.jpg differ
diff --git a/images/background.jpg b/images/background.jpg
index 5b7c146134..9efc5b2fee 100644
Binary files a/images/background.jpg and b/images/background.jpg differ
diff --git a/images/brainImage.jpg b/images/brainImage.jpg
new file mode 100644
index 0000000000..0a799df875
Binary files /dev/null and b/images/brainImage.jpg differ
diff --git a/images/fallback.svg b/images/fallback.svg
deleted file mode 100644
index ac12be23a2..0000000000
--- a/images/fallback.svg
+++ /dev/null
@@ -1,10 +0,0 @@
-
-
diff --git a/images/firstP_OurPublications.jpg b/images/firstP_OurPublications.jpg
new file mode 100644
index 0000000000..ce6acd6c6d
Binary files /dev/null and b/images/firstP_OurPublications.jpg differ
diff --git a/images/firstP_OurResearch.jpg b/images/firstP_OurResearch.jpg
new file mode 100644
index 0000000000..26615dce69
Binary files /dev/null and b/images/firstP_OurResearch.jpg differ
diff --git a/images/firstP_OurTeam.jpg b/images/firstP_OurTeam.jpg
new file mode 100644
index 0000000000..69ea3f8c20
Binary files /dev/null and b/images/firstP_OurTeam.jpg differ
diff --git a/images/icon.png b/images/icon.png
deleted file mode 100644
index 774c4478f6..0000000000
Binary files a/images/icon.png and /dev/null differ
diff --git a/images/lab-logo-transparent.png b/images/lab-logo-transparent.png
new file mode 100644
index 0000000000..d4316a6403
Binary files /dev/null and b/images/lab-logo-transparent.png differ
diff --git a/images/lab-logo.png b/images/lab-logo.png
new file mode 100644
index 0000000000..a282e9477a
Binary files /dev/null and b/images/lab-logo.png differ
diff --git a/images/logo.svg b/images/logo.svg
deleted file mode 100644
index 1d666977e5..0000000000
--- a/images/logo.svg
+++ /dev/null
@@ -1,68 +0,0 @@
-
diff --git a/images/photo.jpg b/images/photo.jpg
deleted file mode 100644
index 691a9880a3..0000000000
Binary files a/images/photo.jpg and /dev/null differ
diff --git a/images/share.jpg b/images/share.jpg
deleted file mode 100644
index 268a3410f5..0000000000
Binary files a/images/share.jpg and /dev/null differ
diff --git a/index.md b/index.md
index bea698059b..3941daf573 100644
--- a/index.md
+++ b/index.md
@@ -1,22 +1,9 @@
---
---
-# Lab Website Template
+# Bio-Signal & System Analysis lab's webssite
-[Lab Website Template](https://github.com/greenelab/lab-website-template) is an easy-to-use, flexible website template for [labs](https://www.greenelab.com/).
-Spend less time worrying about managing a website and citations, and more time running your lab.
-
-{%
- include button.html
- type="docs"
- link="https://greene-lab.gitbook.io/lab-website-template-docs"
-%}
-{%
- include button.html
- type="github"
- text="On GitHub"
- link="greenelab/lab-website-template"
-%}
+a small discription of the lab !
{% include section.html %}
@@ -24,12 +11,12 @@ Spend less time worrying about managing a website and citations, and more time r
{% capture text %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+111 Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
{%
include button.html
link="research"
- text="See our publications"
+ text="Browse our research"
icon="fa-solid fa-arrow-right"
flip=true
style="bare"
@@ -39,20 +26,21 @@ Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor i
{%
include feature.html
- image="images/photo.jpg"
+ image="images/firstP_OurResearch.jpg"
link="research"
title="Our Research"
- text=text
+ text="this a text for our research"
%}
+
{% capture text %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+222 Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
{%
include button.html
- link="projects"
- text="Browse our projects"
+ link="team"
+ text="Meet our team"
icon="fa-solid fa-arrow-right"
flip=true
style="bare"
@@ -62,22 +50,21 @@ Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor i
{%
include feature.html
- image="images/photo.jpg"
- link="projects"
- title="Our Projects"
- flip=true
- style="bare"
- text=text
+ image="images/firstP_OurTeam.jpg"
+ link="team"
+ title="Our Team"
+ text="this is a text for our team"
%}
+
{% capture text %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
+333 Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
{%
include button.html
- link="team"
- text="Meet our team"
+ link="publications"
+ text="See our publications"
icon="fa-solid fa-arrow-right"
flip=true
style="bare"
@@ -87,8 +74,10 @@ Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor i
{%
include feature.html
- image="images/photo.jpg"
- link="team"
- title="Our Team"
- text=text
+ image="images/firstP_OurPublications.jpg"
+ link="publications"
+ title="Our Publications"
+ flip=true
+ style="bare"
+ text="this is a text for our publications"
%}
diff --git a/projects/index.md b/projects/index.md
deleted file mode 100644
index 1d29a19944..0000000000
--- a/projects/index.md
+++ /dev/null
@@ -1,27 +0,0 @@
----
-title: Projects
-nav:
- order: 2
- tooltip: Software, datasets, and more
----
-
-# {% include icon.html icon="fa-solid fa-wrench" %}Projects
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
-
-{% include tags.html tags="publication, resource, website" %}
-
-{% include search-info.html %}
-
-{% include section.html %}
-
-## Featured
-
-{% include list.html component="card" data="projects" filters="group: featured" %}
-
-{% include section.html %}
-
-## More
-
-{% include list.html component="card" data="projects" filters="group: " style="small" %}
diff --git a/publications/index.md b/publications/index.md
new file mode 100644
index 0000000000..58ec52c18b
--- /dev/null
+++ b/publications/index.md
@@ -0,0 +1,36 @@
+---
+title: Publications
+nav:
+ order: 3
+ tooltip: Software, datasets, and more
+---
+
+# {% include icon.html icon="fa-solid fa-wrench" %}Publications
+
+some text before showing publications
+
+{% include tags.html tags="publication, resource, website" %}
+
+{% include search-info.html %}
+
+{% include section.html %}
+
+## Journal papers
+
+{% include list.html component="card" data="Publications" filters="group: featured" %}
+
+1. first pub
+2. 2nd pub
+3. pub 3
+4. IV pub
+
+{% include section.html %}
+
+## conference presentations
+
+{% include list.html component="card" data="Publications" filters="group: " style="small" %}
+
+1. first pres
+2. 2nd pres
+3. pres 3
+4. IV pres
diff --git a/research/index.md b/research/index.md
index 0f700f4f09..9fcef26b47 100644
--- a/research/index.md
+++ b/research/index.md
@@ -7,14 +7,42 @@ nav:
# {% include icon.html icon="fa-solid fa-microscope" %}Research
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
+A small discription of general research theme of the lab
{% include section.html %}
-## Highlighted
+## Highlights
-{% include citation.html lookup="Open collaborative writing with Manubot" style="rich" %}
+{% capture text %}
+
+1st subject that we're working on
+
+{% endcapture %}
+
+{%
+ include feature.html
+ image="images/Research1.jpg"
+
+ title="1st Research"
+ text="this a text for 1st research"
+%}
+
+
+{% capture text %}
+
+2nd subject that we're working on
+
+{% endcapture %}
+
+{%
+ include feature.html
+ image="images/Research2.jpg"
+
+ title="2nd Research"
+ text="this a text for 2nd research"
+%}
+
+
diff --git a/team/emad/IMG_0792.JPG b/team/emad/IMG_0792.JPG
new file mode 100644
index 0000000000..48967c4e14
Binary files /dev/null and b/team/emad/IMG_0792.JPG differ
diff --git a/team/index.md b/team/index.md
index 08318c9183..fead598dfc 100644
--- a/team/index.md
+++ b/team/index.md
@@ -1,15 +1,13 @@
---
title: Team
nav:
- order: 3
+ order: 2
tooltip: About our team
---
# {% include icon.html icon="fa-solid fa-users" %}Team
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor
-incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis
-nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
+maybe or maybenot quick words about the members
{% include section.html %}
@@ -18,17 +16,17 @@ nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
{% include section.html background="images/background.jpg" dark=true %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor
-incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis
-nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
+I donno why but some other text might be needed here! maybe picture of alumni!!!
{% include section.html %}
{% capture content %}
-{% include figure.html image="images/photo.jpg" %}
-{% include figure.html image="images/photo.jpg" %}
-{% include figure.html image="images/photo.jpg" %}
+{% include figure.html image="images/TeamE1.jpg" %}
+{% include figure.html image="images/TeamE2.jpg" %}
+{% include figure.html image="images/TeamE3.jpg" %}
+{% include figure.html image="images/TeamE2.jpg" %}
+{% include figure.html image="images/TeamE1.jpg" %}
{% endcapture %}
diff --git a/testbed.md b/testbed.md
deleted file mode 100644
index 3c95e91bb7..0000000000
--- a/testbed.md
+++ /dev/null
@@ -1,423 +0,0 @@
----
-title: Testbed
-header: https://upload.wikimedia.org/wikipedia/commons/thumb/e/ea/Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg/1024px-Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg
-footer: https://upload.wikimedia.org/wikipedia/commons/thumb/e/ea/Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg/1024px-Van_Gogh_-_Starry_Night_-_Google_Art_Project.jpg
-header-dark: false
-footer-dark: false
----
-
-# Testbed
-
-{% include section.html %}
-
-# Basic formatting
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.
-Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur.
-Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
-
-[External link](https://some-website.org/)
-
-[Internal link](team)
-
-_italic text_
-
-**bold text**
-
-~~strike-through text~~
-
-
-
-Text with extra blank lines above and below
-
-
-
-- list item a
-- list item b
-- list item c
-
-1. ordered list item 1
-2. ordered list item 2
-3. ordered list item 3
-
-Plain image:
-
-
-
-# Heading 1
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-
-## Heading 2
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-
-### Heading 3
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-
-#### Heading 4
-
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-
----
-
-| TABLE | Game 1 | Game 2 | Game 3 | Total |
-| :---- | :----: | :----: | :----: | ----: |
-| Anna | 144 | 123 | 218 | 485 |
-| Bill | 90 | 175 | 120 | 385 |
-| Cara | 102 | 214 | 233 | 549 |
-
-> It was the best of times it was the worst of times.
-> It was the age of wisdom, it was the age of foolishness.
-> It was the spring of hope, it was the winter of despair.
-
-```javascript
-// some code with syntax highlighting
-const popup = document.querySelector("#popup");
-popup.style.width = "100%";
-popup.innerText =
- "Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.";
-```
-
-This sentence has `inline code`, useful for making references to variables, packages, versions, etc. within a sentence.
-
-Lorem ipsum dolor sit amet.
-{:.left}
-Consectetur adipiscing elit.
-{:.center}
-Sed do eiusmod tempor incididunt.
-{:.right}
-
-{% include section.html %}
-
-# Jekyll Spaceship
-
-| Stage | Direct Products | ATP Yields |
-| -----------------: | --------------: | ---------: |
-| Glycolysis | 2 ATP | |
-| ^^ | 2 NADH | 3--5 ATP |
-| Pyruvaye oxidation | 2 NADH | 5 ATP |
-| Citric acid cycle | 2 ATP | |
-| ^^ | 6 NADH | 15 ATP |
-| ^^ | 2 FADH | 3 ATP |
-| 30--32 ATP | | |
-
-$ a \* b = c ^ b $
-
-$ 2^{\frac{n-1}{3}} $
-
-$ \int_a^b f(x)\,dx. $
-
-```mermaid!
-pie title Pets adopted by volunteers
- "Dogs" : 386
- "Cats" : 85
- "Rats" : 35
-```
-
-{% include section.html %}
-
-# Components
-
-## Section
-
-{% include section.html background="images/background.jpg" %}
-
-Section, `background`
-
-{% include section.html dark=true %}
-
-Section, `dark=true`
-
-{% include section.html background="images/background.jpg" dark=true %}
-
-Section, `background` `dark=true`
-
-{% include section.html size="wide" %}
-
-Section, `size=wide`
-
-{% include section.html size="full" %}
-
-Section, `size=full` w/ figure
-
-{% include figure.html image="https://images.rawpixel.com/image_1000/cHJpdmF0ZS9sci9pbWFnZXMvd2Vic2l0ZS8yMDIyLTA1L2ZsMjYyODgwODcyMjYtaW1hZ2VfMS1rb3k1Zzkxay5qcGc.jpg" link="team" width="100%" %}
-
-{% include section.html %}
-
-## Figure
-
-{% include figure.html image="images/icon.png" %}
-{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**." %}
-{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**. `px` width" width="400px" %}
-{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**. `%` width" link="team" width="50%" %}
-{% include figure.html image="images/icon.png" caption="_Lorem_ **ipsum**. `px` height" link="team" height="200px" %}
-{% include figure.html image="images/fallback.svg" caption="_Lorem_ **ipsum**. `px` width, svg" link="team" width="400px" %}
-{% include figure.html image="images/fallback.svg" caption="_Lorem_ **ipsum**. `%` width, svg" link="team" width="50%" %}
-{% include figure.html image="images/fallback.svg" caption="_Lorem_ **ipsum**. `px` height, svg" link="team" height="200px" %}
-
-{% include section.html %}
-
-## Button
-
-{% include button.html type="github" %}
-{% include button.html type="github" style="bare" %}
-{% include button.html type="github" icon="fa-brands fa-youtube" text="Override Text" tooltip="Override tooltip" %}
-{% include button.html type="github" text="" style="bare" %}
-{% include button.html type="github" text="" link="github-handle" %}
-
-{% include section.html %}
-
-## Icon
-
-{% include icon.html icon="fa-solid fa-bacteria" %}
-{% include icon.html icon="fa-solid fa-virus" %}
-{% include icon.html icon="fa-solid fa-flask" %}
-{% include icon.html icon="manubot.svg" %}
-
-{% include icon.html icon="fa-brands fa-github" %} Lorem
-{% include icon.html icon="fa-solid fa-microscope" %} Ipsum
-{% include icon.html icon="manubot.svg" %} Dolor
-
-{% include section.html %}
-
-## Feature
-
-{% capture text %}
-_Lorem_ **ipsum** dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-{% endcapture%}
-{% include feature.html image="images/icon.png" link="team" title="Title" text=text %}
-{% include feature.html image="images/icon.png" title="Title" text=text flip=true %}
-{% include feature.html link="team" %}
-
-{% include section.html %}
-
-## List
-
-### List citations
-
-{% include list.html data="citations" component="citation" %}
-
----
-
-### List projects
-
-{% include list.html data="projects" component="card" %}
-
----
-
-### List team members
-
-{% include list.html data="members" component="portrait" %}
-
----
-
-### List blog posts
-
-{% include list.html data="posts" component="post-excerpt" %}
-
-{% include section.html %}
-
-## Citation
-
-{% include citation.html lookup="doi:10.1016/j.csbj.2020.05.017" %}
-{% include citation.html lookup="Open collaborative writing" style="rich" %}
-{% include citation.html title="Manual title" authors="Manual authors" %}
-
-{% include section.html %}
-
-## Card
-
-{% include card.html image="images/icon.png" link="https://nasa.gov/" title="A Large Card" subtitle="A cool card" description="A cool description" tooltip="A cool tooltip" tags="manual tag" repo="greenelab/lab-website-template" %}
-{% include card.html image="images/icon.png" title="A Small Card" subtitle="A cool card" description="_Lorem_ **ipsum**" tooltip="A cool tooltip" tags="manual tag" repo="greenelab/lab-website-template" style="small" %}
-
-{% include section.html %}
-
-## Portrait
-
-{% include portrait.html lookup="jane-smith" %}
-{% include portrait.html lookup="john-doe" style="small" %}
-{% include portrait.html name="Manual name" style="small" %}
-{% include portrait.html style="small" %}
-
-{% include section.html %}
-
-## Post Excerpt
-
-{% include post-excerpt.html lookup="example-post-1" %}
-{% include post-excerpt.html title="Manual title" author="Manual author" date="2020-02-20" last_modified_at="" %}
-
-{% include section.html %}
-
-## Alert
-
-{% capture lorem %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-{% endcapture %}
-{% capture content %}**Tip** {{ lorem }}{% endcapture %}
-{% include alert.html type="tip" content=content %}
-{% capture content %}**Help** {{ lorem }}{% endcapture %}
-{% include alert.html type="help" content=content %}
-{% capture content %}**Info** {{ lorem }}{% endcapture %}
-{% include alert.html type="info" content=content %}
-{% capture content %}**Success** {{ lorem }}{% endcapture %}
-{% include alert.html type="success" content=content %}
-{% capture content %}**Warning** {{ lorem }}{% endcapture %}
-{% include alert.html type="warning" content=content %}
-{% capture content %}**Error** {{ lorem }}{% endcapture %}
-{% include alert.html type="error" content=content %}
-
-{% include section.html %}
-
-## Tags
-
-{% include tags.html tags="ovarian cancer, dataset, gene expression" repo="greenelab/lab-website-template" link="blog" %}
-
-{% include section.html %}
-
-## Float
-
-### Figures
-
-{% capture content %}
-{% include figure.html image="images/icon.png" caption="Caption" width="200px" %}
-{% endcapture %}
-{% include float.html content=content %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
-{% include float.html clear=true %}
-
-### Code
-
-{% capture content %}
-
-```javascript
-const test = "Lorem ipsum dolor sit amet, consectetur adipiscing elit.";
-```
-
-{% endcapture %}
-{% include float.html content=content flip=true %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. Tristique magna sit amet purus gravida quis blandit turpis cursus. Ultrices eros in cursus turpis massa tincidunt dui ut ornare. A cras semper auctor neque vitae tempus quam pellentesque nec. At tellus at urna condimentum mattis pellentesque. Ipsum consequat nisl vel pretium. Ultrices mi tempus imperdiet nulla malesuada pellentesque elit eget gravida. Integer vitae justo eget magna fermentum iaculis eu non diam. Mus mauris vitae ultricies leo integer malesuada nunc vel. Leo integer malesuada nunc vel risus. Ornare arcu odio ut sem nulla pharetra. Purus semper eget duis at tellus at urna condimentum. Enim neque volutpat ac tincidunt vitae semper quis lectus.
-
-{% include section.html %}
-
-## Grid
-
-### Regular
-
-With Markdown images
-
-{% capture content %}
-
-
-
-
-
-
-![image]({{ "/images/icon.png" | relative_url }})
-
-![image]({{ "/images/icon.png" | relative_url }})
-
-![image]({{ "/images/icon.png" | relative_url }})
-{% endcapture %}
-{% include grid.html content=content %}
-
-### Square
-
-With figure components
-
-{% capture content %}
-{% include figure.html image="https://journals.plos.org/ploscompbiol/article/figure/image?size=inline&id=info:doi/10.1371/journal.pcbi.1007128.g001&rev=2" %}
-{% include figure.html image="https://ars.els-cdn.com/content/image/1-s2.0-S2001037020302804-gr1.jpg" %}
-{% include figure.html image="https://iiif.elifesciences.org/lax:32822%2Felife-32822-fig8-v3.tif/full/863,/0/default.webp" %}
-{% include figure.html image="images/icon.png" %}
-{% include figure.html image="images/icon.png" %}
-{% include figure.html image="images/icon.png" %}
-{% endcapture %}
-{% include grid.html style="square" content=content %}
-
-### Grid of citations
-
-{% capture content %}
-{% include list.html data="citations" component="citation" %}
-{% endcapture %}
-{% include grid.html content=content %}
-
-### Grid of blog posts
-
-{% capture content %}
-{% include list.html data="posts" component="post-excerpt" %}
-{% endcapture %}
-{% include grid.html content=content %}
-
-{% include section.html %}
-
-## Cols
-
-### Text
-
-{% capture col1 %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-{% endcapture %}
-{% capture col2 %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a.
-{% endcapture %}
-{% capture col3 %}
-Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. Tristique magna sit amet purus gravida quis blandit turpis cursus. Ultrices eros in cursus turpis massa tincidunt dui ut ornare. A cras semper auctor neque vitae tempus quam pellentesque nec. At tellus at urna condimentum mattis pellentesque. Ipsum consequat nisl vel pretium. Ultrices mi tempus imperdiet nulla malesuada pellentesque elit eget gravida. Integer vitae justo eget magna fermentum iaculis eu non diam. Mus mauris vitae ultricies leo integer malesuada nunc vel. Leo integer malesuada nunc vel risus. Ornare arcu odio ut sem nulla pharetra. Purus semper eget duis at tellus at urna condimentum. Enim neque volutpat ac tincidunt vitae semper quis lectus.
-{% endcapture %}
-{% include cols.html col1=col1 col2=col2 col3=col3 %}
-
-### Images
-
-{% capture col1 %}
-{% include figure.html image="images/icon.png" caption="Fig. 1a" %}
-Lorem _ipsum_ dolor **sit** amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-{% endcapture %}
-{% capture col2 %}
-{% include figure.html image="images/icon.png" caption="Fig. 1b" %}
-Lorem _ipsum_ dolor **sit** amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-{% endcapture %}
-{% capture col3 %}
-{% include figure.html image="images/icon.png" caption="Fig. 1c" %}
-Lorem _ipsum_ dolor **sit** amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.
-{% endcapture %}
-{% include cols.html col1=col1 col2=col2 col3=col3 %}
-
-### Code
-
-{% capture col1 %}
-
-```javascript
-const test = "Lorem ipsum dolor sit amet";
-```
-
-{% endcapture %}
-{% capture col2 %}
-
-```javascript
-const test = "Lorem ipsum dolor sit amet";
-```
-
-{% endcapture %}
-{% capture col3 %}
-
-```javascript
-const test = "Lorem ipsum dolor sit amet";
-```
-
-{% endcapture %}
-{% include cols.html col1=col1 col2=col2 col3=col3 %}
-
-{% include section.html %}
-
-## Search
-
-{% include search-box.html %}
-{% include search-info.html %}
-
-{% include section.html %}
-
-## Site Search
-
-{% include site-search.html %}
-