all.snippets

snippet # "shebang" b
#!/usr/bin/env ${1:bash}

${0}
endsnippet

snippet JOB
. ~/titan_setup.sh scratch
echo [Name] ${1:$0}
echo [Directory] \`pwd\`
echo [Machine] \`uname -n\`
echo [Start] \`date\`
echo [args] $*
echo $* | tr ' ' '\n' | perl -ne 'BEGIN{$i=1};print "\$$i: $_";$i++'
time1=$( date "+%s" )
timestamp=$( date "+%m_%d_%I%p" )

${2:}

time2=$( date "+%s" )
echo [deltat] $(( $time2 - $time1 ))
echo [End] \`date\`
endsnippet

snippet snip_usage
if [[ $# == 0 || "$1" == "h" || "$1" == "-h" ]]; then
cat <<EOF

  USAGE: bowtie_build.sh <REF_FASTA> <PREFIX>

EOF
exit
fi
endsnippet

snippet np
import numpy as np
endsnippet
snippet plt
import matplotlib.pyplot as plt
endsnippet

snippet pymc
import pymc3 as pm
endsnippet

snippet eq
$$

$$
endsnippet